Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2058 208 1e-51 seq673 84.2 3e-14 seq389 78.8 1e-12 >seq2058 Length=269 Score = 208 bits (230), Expect = 1e-51 Identities = 170/203 (84%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA- 118 |||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 269 ACCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACAT 210 Query 119 --GCCACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||||| | | ||| | | ||||||||||||| |||||||||||||||||||| Sbjct 209 AAGGGGCCAACAAAATGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCGG 150 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 90 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 || ||||| || ||||||||||| Sbjct 89 CATGAAAGCGCCATCAATCTGTC 67 >seq673 Length=373 Score = 84.2 bits (92), Expect = 3e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || ||| ||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 59 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAG 1 >seq389 Length=510 Score = 78.8 bits (86), Expect = 1e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 || ||| ||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 508 TGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAG 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796754210892