Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq341 333 5e-89 seq577 125 1e-26 seq402 100 5e-19 >seq341 Length=599 Score = 333 bits (368), Expect = 5e-89 Identities = 206/219 (94%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| || | || ||| |||||||||||||||||||||||||| Sbjct 381 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCTC 440 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 500 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 560 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||||||||||||||||||||||||||||||| Sbjct 561 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 599 >seq577 Length=397 Score = 125 bits (138), Expect = 1e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 397 TAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAGGCCACAC 338 Query 277 TTTCATGGTTTGTATTCAC 295 ||||||||||||||||||| Sbjct 337 TTTCATGGTTTGTATTCAC 319 >seq402 Length=497 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTACGTTT 60 Query 224 TCT 226 || Sbjct 61 ACT 63 Score = 82.4 bits (90), Expect = 1e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 443 TAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAGGC 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854349316992