Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq6 107 4e-21 >seq6 Length=420216 Score = 107 bits (118), Expect = 4e-21 Identities = 181/258 (70%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||| ||||||||||||||| |||| || || || ||||||||||||| || | ||| Sbjct 188930 TTCGCCGTGGTTGCCCTCGTTGTTGGCGAGACCAAAGAGGCGCTCCTTGAGCATACGATC 188989 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCG-CCTTGTCACTGAACCCCG 167 ||||||| || || || | || || ||| | | | ||||| || || | Sbjct 188990 CTTTCCGTTCCAGAGAGCGAGACTCAAGC-CCATCCTGCAGTGATTGTCCGAGAGACCGG 189048 Query 168 CCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGG 227 | || |||||||| ||||| ||||| | ||||| || || || || ||||||| | Sbjct 189049 CGAGACCGTCCTCACCCCATCGGTAAGTACGGCTACGGGCCAACTCGTGAGGGAAGTGAG 189108 Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287 |||||| || || | || ||||||||| || || || ||||| || || ||||| | Sbjct 189109 TCCAGGCATCTCCGTTTGCCGAGTAGTCTTCTCGAACGGTACCCCACTGACGCTCGCTGA 189168 Query 288 GGTAGGGGCCCCACTCGC 305 | || || ||||| |||| Sbjct 189169 GATAAGGACCCCA-TCGC 189185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007940205440