Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 383 1e-101 seq21 203 3e-47 >seq4 Length=437454 Score = 383 bits (424), Expect = 1e-101 Identities = 1240/1894 (65%), Gaps = 56/1894 (3%) Strand=Plus/Minus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 ||||| ||||| || || | ||| | |||||| | || ||||| | ||||||||||| Sbjct 49965 GTGAATTGGATGGCGTTGGAAGCAGGCTTGGTGCGCAGGTAGTAGGTACCGGTCTTGAGA 49906 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCAC 65202 || ||| | ||||| |||||||| | | | | || || | ||| | | | Sbjct 49905 CCCTTCTTCCAGCCGTAGAAGTGCATCGAGG-TGAGCTGGCCGAACGTGGGCGCCGAGAG 49847 Query 65203 ATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAAT 65262 ||| || || | |||||| ||| |||| | ||| || || || |||||||| || Sbjct 49846 ATGGATGTTGAGCGACTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCATGTCGAT 49787 Query 65263 GATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGA- 65320 ||| | | || | | |||||||||||||||||||| || | | | | | || Sbjct 49786 GATG-GCCTTCTGGCTGATCTCCCAGACGGTCTTGTAGAG-CTTCTTGATGCGGTCGGGG 49729 Query 65321 ATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCT 65380 || | | || ||||| ||||| | | || || ||||| || ||||| || Sbjct 49728 ATGCCGGGCACGTTCTGGATGGAACCGCCGTGGGCGATGATGCGGTTCTTCATCGTGTCG 49669 Query 65381 GACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCG 65440 |||||| ||| |||| || | | | ||| | | |||| || |||||||| Sbjct 49668 TTCCACAAGCCCTGCTCGACGAGCTCGCGGAGCAACCAAGGGTTGACCACCTGGAACTCA 49609 Query 65441 CCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTG 65500 |||| || |||||||| ||||||||||| ||| || || ||| | || || Sbjct 49608 CCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAA 49549 Query 65501 CCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAAT 65560 || | || || || || ||||| ||||| ||||||| ||| | ||||| || | Sbjct 49548 CCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGA 49489 Query 65561 CCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 |||| | | | || || ||| || || |||||| ||| | ||| || Sbjct 49488 CCGTGCTTGGCGATCTTAGCCTTGA-GC---TCTGCCCAGTCCCAGA--GGTC---CGAA 49438 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 | | | ||| |||||| || | ||||| || ||| || || || | | Sbjct 49437 GGCGTG-ACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTA 49379 Query 65677 ACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGGCAAAAT 65735 | ||||| || | ||||| || || | || | | || ||||| || || | Sbjct 49378 GGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGCGTGGT 49320 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA- 65794 | |||||||| || || || || || ||| ||||| ||| | ||| || Sbjct 49319 AGATGGTCTCAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGACTCAAA-GGCGTAG 49261 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 ||||| | | || | |||||| |||||||| || || ||||| ||||| || || ||| Sbjct 49260 CCCATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGC 49201 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 | ||||| | | ||||| ||||| ||||| ||||| || || || || | | Sbjct 49200 ATGTTGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGA 49141 Query 65915 TTGCGTGTCACCACATGCACGATACGTCGCAATT-----GTTCGAAATCAAAATGTTTAG 65969 || | || || ||| | || ||| | | | ||| || | |||| | Sbjct 49140 TT-CTTG----CAGATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTAC-GTTTTG 49087 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 | || || | || | ||| |||| ||||| | || || |||||||||| Sbjct 49086 G-----CGACAGGGTCG------ATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGA 49038 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 | || | |||||| || ||| | ||||||| || |||||||||| || ||| | Sbjct 49037 CGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGA 48978 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 ||||||| | |||| || || |||||||| ||| || |||||||| | ||| | | Sbjct 48977 TGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGG 48918 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | |||||||||| ||| |||| | |||||||| ||| || | ||||| || | Sbjct 48917 GGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTGACGG 48858 Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269 | || | | ||| | | ||||| | ||||||||| | || || || || Sbjct 48857 TTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGT 48798 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | |||| |||| ||| |||| || || ||||| |||||||| || || | ||| | Sbjct 48797 AGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCT 48738 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | || | ||| || ||||| || | |||||||||||||||||| || || || || Sbjct 48737 CGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCA 48678 Query 66390 GCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 ||| || ||||||| |||||||| | |||||||||||||||| || | ||||||| Sbjct 48677 TCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATG 48618 Query 66450 GTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 | || | ||||||||| || | ||| ||| ||| |||||| |||||||||||||| | Sbjct 48617 GCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGG 48558 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGT 66569 | ||||| ||||| || | ||| ||||||| |||||| || ||||||||| Sbjct 48557 CAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTTACTGACACCGTTGGTGCCGG 48498 Query 66570 CGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 ||||| || || || || || || ||| | || ||||| ||||||||||| ||| Sbjct 48497 CGATGTACGAGCC-GGTACCGCGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTC 48439 Query 66629 TTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 || ||||| ||||| || | | || | | |||||||| || ||||| ||| Sbjct 48438 TTGGAGATCATGGCACA--CGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCT 48381 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | ||||| | ||| |||| || || || || | ||||| | || |||||||| Sbjct 48380 TCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGG 48321 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 |||| | ||||| |||||||| | | |||||| |||||| ||||||||| | | Sbjct 48320 TGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGATTGTAAGTCTCGATGGCGCTCT 48261 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 | |||| || || || || || | || ||| ||||| || | || |||||| || || Sbjct 48260 CGATGTCTTGACCGTGGATGCCAACAGCGACA-CGCATGAGCATGTGTTGAGGACGCTC- 48203 Query 66866 ACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | || ||| ||||| | | | |||||| || || || ||||||| || ||| | Sbjct 48202 AGCGACCTTTCCGTTGATGCGGAGCAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGAA 48143 Query 66925 CGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958 ||| | ||||||| ||| | ||||||| Sbjct 48142 GTTGTAGTGGAAATCGCGCTCATAGATGATGGCC 48109 >seq21 Length=224232 Score = 203 bits (224), Expect = 3e-47 Identities = 376/541 (70%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 32965 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 32906 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||||| | | | ||| | || | || || || Sbjct 32905 TCCAAGGATCTTCACGACTGGGACAACAAGCTCAACGA-CAACGAGCGCCACTTTATCTC 32847 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| |||||||| |||||||||||||| ||||| || | || || Sbjct 32846 CCACGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTCGAGCG 32787 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 |||| || | | || | || | | ||||| || || |||||||| |||||||| | Sbjct 32786 TTTCAGCTCCGAAGTT-CAGGCTGCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGA 32728 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | |||||||| ||||||| | || | | Sbjct 32727 TGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACTCGTACATTCGCGAACCCG 32668 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | | |||||| | || | ||| ||||||| || || | || |||| ||| || | Sbjct 32667 AGCAGCGTGAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGCCG 32608 Query 61442 ATTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGG 61498 | ||||| |||| || |||||| | ||| || || || |||| || || | | | Sbjct 32607 ACTGGGCTCTTCGAT-GGATCAGCG--ACAGGCGCGCCACCTTTGCCGAGCGTCTCGTTG 32551 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | || || | |||||||| | || ||| || || ||||| | ||||| ||| | | Sbjct 32550 CTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCATCTTCTGGCTCA 32491 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 |||| ||||| || ||||||||||| |||||| ||| ||| | || || || ||||||| Sbjct 32490 AGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 32431 Query 61619 G 61619 | Sbjct 32430 G 32430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539257324480