Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1070 289 5e-76 >seq1070 Length=636 Score = 289 bits (320), Expect = 5e-76 Identities = 220/257 (86%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAAT 120 ||| |||||||| ||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 498 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 439 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 438 ATATTAGCATGGAATAACAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAACTG 379 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 ||||||||||||| ||||| || |||||| | |||||| | ||||||||||||| Sbjct 378 CCGTAATGATTAAAAGGGACAGCCGGGGGCATTAGTATTTGCACGCTAGAGGTGAAATTC 319 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| |||||| ||||||||||||| || ||||| |||||||||||||||| Sbjct 318 TTGGATTGTGCAAAGACTTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 259 Query 301 GTGAACGAAAGTTAGGG 317 ||||||| ||||||| Sbjct 258 -AGAACGAAGGTTAGGG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915074974528