Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3092 370 4e-100 seq8392 75.2 5e-11 >seq3092 Length=338 Score = 370 bits (410), Expect = 4e-100 Identities = 251/280 (90%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 295 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 236 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||| |||||||| || | ||||||||||||||||||| Sbjct 235 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCGATC 178 Query 528 CTGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | ||||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 177 CTCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGG 118 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 117 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTC 58 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||||||||||||||||||||||| Sbjct 57 TGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 18 >seq8392 Length=241 Score = 75.2 bits (82), Expect = 5e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 17 TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAG 76 |||| ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| | Sbjct 70 TAGCTTTGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTG 11 Query 77 GTAAAT 82 |||||| Sbjct 10 GTAAAT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079706971550