Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq12264 75.2 2e-11 >seq12264 Length=213 Score = 75.2 bits (82), Expect = 2e-11 Identities = 138/200 (69%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 50 CGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCA 109 |||||| ||| | |||||||||| |||||||||||| ||||| ||| | || || Sbjct 206 CGTCTTAGCAAGTTGCTGTGTTTTTGGTAAACAGTCGCAGCCCTCGATTTTGTGACACTC 147 Query 110 CCACCAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCC-CGAAGTTACGGGGC 168 | | | || |||| | ||| ||||| || | || ||||||| Sbjct 146 AAAATAAATGAAA------TTCATCTATTCTGGTTACCCTTATCGTCTAACTTACGGGCA 93 Query 169 CATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC 228 || |||||||| |||||| || | || | | | |||||||||||||||||||| Sbjct 92 CAATTTGCCGAGTTCCTTCACAAGCATTATCTCTA-CGCCTTAGTATTCTCTACCTACGA 34 Query 229 ACCTGTGTCGGTTTACGGTA 248 ||||||||||||||| |||| Sbjct 33 ACCTGTGTCGGTTTAGGGTA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694308102453