Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-17 >seq4 Length=278198 Score = 95.1 bits (104), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||||||||||||||||||| |||| || ||||| || |||||||||| || | ||| Sbjct 168131 TTCACCGTGGTTGCCCTCGTTGTTGGCGAGACCGAAAAGACGCTCCTTGAGCATACGATC 168190 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCG-CCTTGTCACTGAACCCCG 167 ||||||| || || || | || | ||| | ||| ||||| || || | Sbjct 168191 TTTTCCGTTCCAGAGCGCAAGACTCAAAC-CCATTCTGGCGTGGTTGTCGGACAAACCGG 168249 Query 168 CCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGG 227 | || || ||||| ||||| ||||| | ||||| || || || || ||||||| | Sbjct 168250 CAAGACCATCCTCACCCCATCGGTAAGTACGGCTACGAGCGGACTCGTGAGGGAAGTGAG 168309 Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287 ||| || || || | ||| || || || || || || ||||| || || || || | Sbjct 168310 TCCAAGCATCACCGTTGGCCGAATAATCCTCTCGAACGGTACCCCACTGACGCTCACTGA 168369 Query 288 GGTAGGGGCCCCACTCGC 305 |||| || ||||| |||| Sbjct 168370 GGTAAGGACCCCA-TCGC 168386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007862297120