Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq36 367 1e-96 seq67 196 4e-45 >seq36 Length=116313 Score = 367 bits (406), Expect = 1e-96 Identities = 1228/1882 (65%), Gaps = 68/1882 (4%) Strand=Plus/Plus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 |||||||| | || || | || | |||||| | || ||||| | ||||||||||| Sbjct 37523 GTGAACTGAACAGCGTTGGATGCTGGCTTGGTACGGAGGTAGTAGGTACCGGTCTTGAGA 37582 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || |||| | ||||| |||||||| | || | | | || | | || Sbjct 37583 CCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAGGAAGGAGCCGACAAG 37642 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || || || | || ||| ||| ||| || ||| ||||| || |||||||| ||| Sbjct 37643 TGGATGTTGAGGGATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGCCATGTCGATG 37702 Query 65264 ATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGG--CGACGTACC-TCAATTGG 65319 ||| | | || | | |||||||| || |||||||| || | ||| ||| || Sbjct 37703 ATA-GCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCA---GG 37758 Query 65320 AATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTC 65379 ||| | || || ||||| ||||||| | || ||||| || || ||| | || Sbjct 37759 AATACCAGGAACGTTCTGGATGGAACCACCGTGAGCGATAATACGGTTCTTCATGGTGTC 37818 Query 65380 TGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTC 65439 |||||| || |||| || | | | ||| | | |||| ||| ||||| || Sbjct 37819 GTTCCACAATCCTTGCTCGACGAGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTC 37878 Query 65440 GCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTT 65499 || | || |||||||| ||||||||||| ||| ||| || ||| |||| || Sbjct 37879 ACCAGCAAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAA 37938 Query 65500 GCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAA 65559 || | || || || ||||| || ||||||||||||| ||| | ||||| || | Sbjct 37939 ACCCAAGATCTGACTTGTGGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAG 37998 Query 65560 TCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATC 65613 |||| | | | || ||| ||| || |||||| ||| | |||| | Sbjct 37999 ACCGTGCTTGGCGATCTTGGCCTTGAGCGAAG----CCCAGTCCCAAAGATCGGA--AGG 38052 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGGTGAAC 65669 | ||| || ||||| || | || || ||| | |||| | || |||| Sbjct 38053 GGTAACACCC------CACATGTCGTACTGGAG--TTC--ACCCTGGGAGGCAGGGGAAC 38102 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCG 65728 || | | | ||||| || | ||||| ||| | | || | | | |||||| ||| Sbjct 38103 CGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCAACTCGCACGATCG-CTCGAGAGCG 38161 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGT-CGATTAAGTTCACGTGCCTCATCGCTCTCGTA 65787 || || ||||||||||| || | || | ||| ||| ||||| ||| | Sbjct 38162 GCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAAGCG-ACGAGCCTCGGGCGACTCAAA 38220 Query 65788 CGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 ||| || ||||| | | || | ||||| ||||| || || || ||||| ||||| | Sbjct 38221 -GGCGTAACCCATGATCATGAAGGCATCGGCGAGACCCTGGACACCGATACCAATGGGGC 38279 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 | ||||||| || ||||| | ||||| ||||||||||| ||||||||||| || Sbjct 38280 GGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATATCGATGATTT 38339 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA--CGTCGCAA--TTGTTCGAAATCAAAA 65962 ||||| || | |||| |||| | | |||| | || | || | | Sbjct 38340 TGTTCAAGTT-----------CTTGCA-GATAGCCTTGGCAACCTCGTGCAAACGCTTGA 38387 Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 || ||| | | | ||| | | || ||||||| || | || || ||| Sbjct 38388 AGTCGTAGACCTTGGTAA----CGGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGG 38443 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||| ||||| | ||| || ||||| | ||||||| || || ||||||| || | Sbjct 38444 TTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAG 38503 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || || || || | |||| || || |||||| ||| || |||||||| | Sbjct 38504 CACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGG 38563 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 ||| | || | |||||||| || ||||| | |||||||| ||| || | ||| Sbjct 38564 ATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCC 38623 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 || || || || | | ||||| | |||||| | |||||||| | ||||| | Sbjct 38624 TTGACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACGCTCGAACTCT 38683 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 ||||| | |||| |||| || |||| || || ||||| |||||||||||||| Sbjct 38684 TCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCG 38743 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 | ||| || || | ||| || ||||| || | |||||| ||||||||||| || || Sbjct 38744 TTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGG 38803 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || || || | ||||| || ||||||||||||||||||||||||| || | Sbjct 38804 GCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAG 38863 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||| || || | ||||||||| || | || ||| ||| ||||| ||||||||| Sbjct 38864 TGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACG 38923 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 || || ||| |||||||||||||| | ||| || |||| ||||| || ||| Sbjct 38924 TAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTG 38983 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACC 66621 |||||| | ||| ||| || || || || || ||||| |||| |||||| ||||| Sbjct 38984 GTGCCGGCAATGTAGGAGCC-AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCACC 39042 Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 ||| ||||| ||||| ||||| || | |||| | | |||||||| || ||| Sbjct 39043 GGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAAATGCCGTCGATCGAG 39100 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 ||| |||| ||||| | ||| | || || || || || | ||| || | || | Sbjct 39101 TCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACCAGCGTTG 39160 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 |||||||| || | ||||| |||||||| | | |||||| ||||||||||||||| Sbjct 39161 AAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGATG 39220 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGC 66859 | || |||| | ||| ||||| || | ||| ||||| || | || || || Sbjct 39221 GCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGA 39280 Query 66860 CGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACC 66918 || || | || || || ||||| | | |||||||| || || || ||||||| || Sbjct 39281 CGCTC-AGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCC 39339 Query 66919 AAAGTACGAGTAATTGAAATCG 66940 ||| | ||| | ||| ||| Sbjct 39340 GAAGAAGTTGTAGTGGAAGTCG 39361 >seq67 Length=86059 Score = 196 bits (216), Expect = 4e-45 Identities = 371/539 (69%), Gaps = 9/539 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||| ||||| | |||||| |||| | Sbjct 5192 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTT 5133 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | |||||||||| | | | ||| | || | || || || Sbjct 5132 TCCAAGGACCTCCATGACTGGGACAACAAGCTCAACGA-CAACGAGCGTCACTTTATCTC 5074 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| || ||||| || ||||||||||| ||||| | | || || Sbjct 5073 CCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCG 5014 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| || || || | | ||||| || || ||||| || |||||||| || Sbjct 5013 TTTCAGTTCCGAAGTTCAGGCTGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 4954 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| | ||||| |||| ||| | |||||||| || ||||| | |||| | Sbjct 4953 GGAGAACATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGAGCCTGA 4894 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || ||| | || | ||| ||||||| || || | || |||| ||| || || Sbjct 4893 GCAGCGAGAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGCCGA 4834 Query 61443 TTGGGC-CTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 ||||| |||| |||||||| | | ||| | | || || | ||||| | | || Sbjct 4833 CTGGGCTCTTCG-TTGGATCAGCGACCGCAAAGCC-ACCTTCGCCGAACGTCTCGTTGCC 4776 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || |||||| | || ||| || || || ||| | ||||| ||| | ||| Sbjct 4775 TTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAG 4716 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 || ||||| ||||||||||| || |||||| ||| ||| | || ||||||||||| || Sbjct 4715 AAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGG 4657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397501807537040