Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq990 78.8 1e-12 seq623 78.8 1e-12 seq429 78.8 1e-12 >seq990 Length=4511 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||||||||||||| |||| | |||||||||||||||||||| |||| Sbjct 398 CAGTGTAGCCCGCGTGCGGCCCAGGGCATCGAGGGGCATCACAGACCTGTTATCGCCT 455 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || |||||| ||||||||||||||| |||| |||| ||| || ||||||||||||||| Sbjct 498 CGCTCGTTACCGGAATTAACCAGACTGCTCACGCCACGAACCAACAACGGCCATGCACCA 557 Query 223 CCACCCATAGAATC 236 ||| || ||||| Sbjct 558 CCATCCGCGGAATC 571 >seq623 Length=900 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||||||||||||| |||| | |||||||||||||||||||| |||| Sbjct 267 CAGTGTAGCCCGCGTGCGGCCCAGGGCATCGAGGGGCATCACAGACCTGTTATCGCCT 324 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || |||||| ||||||||||||||| |||| |||| ||| || ||||||||||||||| Sbjct 367 CGCTCGTTACCGGAATTAACCAGACTGCTCACGCCACGAACCAACAACGGCCATGCACCA 426 Query 223 CCACCCATAGAATC 236 ||| || ||||| Sbjct 427 CCATCCGCGGAATC 440 >seq429 Length=1183 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||||||||||||| |||| | |||||||||||||||||||| |||| Sbjct 550 CAGTGTAGCCCGCGTGCGGCCCAGGGCATCGAGGGGCATCACAGACCTGTTATCGCCT 607 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || |||||| ||||||||||||||| |||| |||| ||| || ||||||||||||||| Sbjct 650 CGCTCGTTACCGGAATTAACCAGACTGCTCACGCCACGAACCAACAACGGCCATGCACCA 709 Query 223 CCACCCATAGAATC 236 ||| || ||||| Sbjct 710 CCATCCGCGGAATC 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786669287