Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq655 161 8e-35 >seq655 Length=33610 Score = 161 bits (178), Expect = 8e-35 Identities = 566/874 (65%), Gaps = 30/874 (3%) Strand=Plus/Plus Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 ||||||| |||| |||||||| | ||||| || || | | |||||||| || || | Sbjct 29714 CAAGAGACCCGAGATTGCAGACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCG 29773 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 ||||||| || || | || || |||| | ||| || || |||| || ||||| | Sbjct 29774 TGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACG 29833 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 | ||||||||||| |||||||| | |||||||| | || | | || | |||| Sbjct 29834 CGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCC 29893 Query 66189 AAAG----AGCGCGTGCCTTCACCGTACGTACC--GCCCTACCTTTGCGTTCGTAATGTT 66242 | || |||| || || | | | | || |||| || || ||||| | | Sbjct 29894 ACAGCTTCTGCGCCGGCATTGTC--TTCTTTCCCAGCCCGTCC----CGCTCGTACCGCT 29947 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 |||| || |||||| || ||||| ||| ||| | || | || |||| Sbjct 29948 CGTACAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAGGCGCATCGTTCGGAC 30007 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCA 66360 | | ||||| ||| || | |||||| || || |||||||| || || || ||||| Sbjct 30008 AGAACAGCGTCCAGCTCCCGT--TGTTCTCCACGCGCCGCATAAACAGGTCTGGCATCCA 30065 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC---GTGATTTTTGCGCAA 66417 || || ||| | || || ||||| || |||||| |||| || || ||| || | Sbjct 30066 CAGCGCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGA 30125 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 |||||| || | | || |||||||| || || |||||||| || |||| |||| Sbjct 30126 ---GAGGAAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCAAACGCGCCCGG 30182 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTG--TTGAAGACACGCAACATC 66535 | ||||| || || ||||| | || || || | ||| | |||||||| | |||| Sbjct 30183 TCTTTTGCTTCCTCCCTGGTCCGCATACCGTGC--CGTTGCATCAAAGACACGGAGCATC 30240 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595 || || | ||||| || ||| || || || ||| | || || | |||||| || Sbjct 30241 GGAACAATACCGTTTGAAACGCCGTTTGTTCCCCGGATAAGAGACCCGCTTGCCCGGATG 30300 Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACT 66655 | ||| | ||||| || || || || | |||| ||| || || || | | || | Sbjct 30301 TTGTGGATGTTCAGCCCGATGCCTGCGCCTGTCTGCGATATCAGCGCGCACTGTGTCAGT 30360 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAA 66713 ||| | | || || | || ||||| | || ||||| | |||| || | || Sbjct 30361 GTCTTGTAGATCCCCTTCATCGAGTCGTCGGCCATCGTCAGCACAAAGCAGCTGGA--AA 30418 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773 | ||| ||| | || |||| | || || ||||| ||||| | |||| | | Sbjct 30419 GCTGGTTGTTGTCTTTGCCGGCATTCATCAGCGTCGGTGTTGCGTGGATGAAGTTCCGCC 30478 Query 66774 GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833 ||||||||| | ||| ||||| | | ||||||| ||||| || ||| | | || Sbjct 30479 GAGACATGTGCTCGTATGTCTCCAGCGCCTTCTCAATGTCCTCGCCGTGGATCTCAACTG 30538 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGAC 66867 || |||||||| | || || |||| ||||| Sbjct 30539 CAACACGCATCAGCATGTGCTGCGGCCTCTCGAC 30572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559632063280