Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq602 187 2e-42 seq113 82.4 6e-11 >seq602 Length=19998 Score = 187 bits (206), Expect = 2e-42 Identities = 595/914 (65%), Gaps = 19/914 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| | ||| ||| |||||| | ||||| | || || ||| | |||||||| Sbjct 7450 GAACCTTTGTTGAGAGATAATCCTTCCAGATTCGTGATTTTTCCAATCAAATATGAGGAA 7391 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| | || |||||| ||| ||||||||||||||||| || ||||| || || Sbjct 7390 ATCTGGCTTTTTTATAAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGACCTG 7331 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 || || || | | | |||| | | | | || ||| |||| ||||| || || Sbjct 7330 TCAAAGGATCTAACCCATTGGGCGTCTCTGAATGA-CGGGGAACGCCATTTTATCTCTCA 7272 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || ||||| || ||||| || || || || || || ||||| |||||| | | || || Sbjct 7271 CGTTTTGGCCTTTTTTGCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGCTT 7212 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 || |||||||||| | | ||||| |||| || ||||| ||||| || ||||| Sbjct 7211 TGCTAGGGAGGTGCAAATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATGGA 7152 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 ||| |||| || |||||||| |||| || || || || || | || | ||| Sbjct 7151 AAATATCCATTCTGAGATGTATTCCCTTCTGATTGACACATATATTCGCGATGAGCAGGA 7092 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATT 61444 ||| | ||||||||| |||||||| || || || |||| ||||| | | Sbjct 7091 GCGTCTAAAATTGTTCAACGCCATCGAATATATCCCTAGCATTGAA-AAAAAAGCCAAAT 7033 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504 |||| || || ||||| | | | || || | ||| | || || | ||||||| Sbjct 7032 GGGCTTTGAACTGGATTGCAAATCCAGATGCCCCCTTTTCGCAGAGACTGGTTGCATTTG 6973 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | || ||||| |||| || || |||||||| || ||||||||| | || || | Sbjct 6972 CCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAAAGC 6913 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || || ||||| || || || || ||| ||| |||| | |||||||| | | Sbjct 6912 GCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTCTAC 6853 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA---GG 61681 || || ||||| || ||||| || | | |||| ||| | || || Sbjct 6852 ATACCGAGTTTGC---TTGTCTATT---ACATTCCCACCTGAAAAAGCCGGCAGATCCGG 6799 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | | || ||| | |||||| || | ||| |||||| ||| || ||| Sbjct 6798 CGATTATATATGCCATTATCGATGAGGCCGTTAGTATTGAACAGTCTTTTTTGGTTGATT 6739 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || |||| ||| || || || ||||||| ||||| ||||||||| || | Sbjct 6738 CTCTGCCGGTCGACCTAATTGGTATGAATTCCACCTTAATGAAGCAGTATATCTGCTTCG 6679 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATG---AAGCGGATCTATAATACGAAAAACC 61858 ||||||| | || || || | ||| || || | | |||||| |||||| Sbjct 6678 TTGCCGATAGACTTCTGCTCTCACTTGGTTTGTCAAAAC---TGTATAATGTCGAAAACC 6622 Query 61859 CATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTG 61918 | |||||||||||||| | ||||| || || || | || ||||| || || | Sbjct 6621 CGTTTGATTTCATGGATTTAATTTCCATGTCAGGAAAAAGCAACTTTTTTGAAAAGAAAG 6562 Query 61919 TAGGCGACTATCAA 61932 | ||||| |||||| Sbjct 6561 TTGGCGAATATCAA 6548 >seq113 Length=5777 Score = 82.4 bits (90), Expect = 6e-11 Identities = 308/480 (64%), Gaps = 6/480 (1%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || || | || || | ||| || | ||| || | ||||| ||||||||||| Sbjct 3325 ATCGACGGTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGT 3384 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTG-CAT--AATTCGG 65193 ||| || || ||| | || |||||||| || | | || | || || || Sbjct 3385 CTTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GG 3441 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 |||||| | || ||||| | ||||| || || ||||| | || || || | || Sbjct 3442 CTCGGCAATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGC 3501 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 ||| |||||||| | | | || ||||| |||||| | || ||| | | || || Sbjct 3502 CATATCAATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTC 3561 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 |||||||| || | | | ||| ||| |||||| || | | ||||| Sbjct 3562 TTCAGGAATCTCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTGGTTCGCAT 3621 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 ||| | ||||||||| | || || | || | || | | |||||| | ||| Sbjct 3622 AGACGCATCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTGAGAATTTG 3681 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 || |||||||| | || || | ||| || || |||||| || |||||| |||| Sbjct 3682 AAATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCATTC 3741 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 || |||| ||||||| || || || || ||||| ||||| | | ||| ||||| Sbjct 3742 GTTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTT 3801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565034639680