Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq105 116 3e-21 >seq105 Length=68279 Score = 116 bits (128), Expect = 3e-21 Identities = 384/584 (66%), Gaps = 15/584 (3%) Strand=Plus/Plus Query 61061 TATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCT 61120 |||| ||||| || ||| || | ||||||||| ||||| ||| | || | || | Sbjct 55228 TATT-TTCCCAATAGAGCATCATGATATTTGGGCAATGTATAAAGATGCAGTGGCAGTAT 55286 Query 61121 TCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA---GCGTTTAT 61177 ||||||| | || || || || ||||| || ||| ||||||||| || | || Sbjct 55287 TCTGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGAAAAGC-TAAAT 55345 Query 61178 CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTA 61237 | | || ||| || || |||| | || |||||||| || || || || | Sbjct 55346 GCAAATGAGAG--ACACTTTATCTCCTATGTACTTGCATTCTTTGCTGCCTCAGATGGAA 55403 Query 61238 TCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTT 61297 | || ||||| || ||| | ||| | || || || || ||| | ||||| | | Sbjct 55404 TTGTAAATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCGAGGCAAGAT 55463 Query 61298 GTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCA 61357 |||||||||| ||||| ||| || || || | ||| | |||||||| ||| | || | Sbjct 55464 GTTTCTACGGATTCCAAATTATGATAGAAAACATACACGCAGAGATGTATAGTTTACTAA 55523 Query 61358 TCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC-GATTGTTCAATGCCATCGAGACG 61416 | || || ||||||| ||| || ||| |||| || ||| | || || |||| Sbjct 55524 TAGACACCTACATCAAGGATACTGCAGAA-AAGAACTTCTTATTCCAGGCAATGGAGAAT 55582 Query 61417 ATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGG 61474 || || | | || ||| || || |||||| | | ||||| | ||| |||| | Sbjct 55583 ATTCCTGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGAT-ATCAG-ACAAGGAGT 55640 Query 61475 CTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGAT 61534 ||| |||| || | | | || ||||| || ||||| |||| ||| ||||| Sbjct 55641 CTAGCTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTTCTCTGGAT 55700 Query 61535 CGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCA 61594 | ||||| |||| || ||| | ||||| | || |||||||| ||||| || ||| | Sbjct 55701 CATTTGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTACTTTCTCTA 55760 Query 61595 ATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | ||| |||| | || | || || || | || ||||| ||||| Sbjct 55761 ACGAGCTGATCAGCA-GAGATGAAGGACTTCACTGTGACTTTGC 55803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567098763040