Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq79 242 1e-61 >seq79 Length=65341 Score = 242 bits (268), Expect = 1e-61 Identities = 201/244 (82%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC-CAAGCCCGTTCCCT 338 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 64314 ACTAAAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATAAATAACAAGCCCGTTCCCT 64255 Query 339 TGGCT-GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 || | |||||||| | | || ||| |||||||||| ||||||||||| ||||||||| Sbjct 64254 TGTATAGTGGTTTCACAAAATTGTAAGTAGGGACAGTAGGAATCTCGTTGCTCCATTCAT 64195 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 64194 GCGCGTCACCAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 64135 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||||| ||| || | ||||| ||| | | ||||||||||||| Sbjct 64134 GCCGTTTACATTCGC---------TTACACAACTTTAACAATAAATGCACTGGGCAGAAT 64084 Query 518 TCAC 521 |||| Sbjct 64083 TCAC 64080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635191235328