Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq242 286 3e-72 >seq242 Length=24773 Score = 286 bits (316), Expect = 3e-72 Identities = 588/861 (68%), Gaps = 25/861 (3%) Strand=Plus/Plus Query 61082 AGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCG 61141 |||| | |||| |||||||| |||| | || |||||||| || || ||||| | Sbjct 11618 AGGACGTATGGCAGATGTACAAGCAGGCACTGTCATCATTCTGGACAGTTGAAGAGGTTG 11677 Query 61142 ATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 || ||||||||||||| |||||||| | | | | | ||| | |||||||| Sbjct 11678 ATCTGTCCAAAGACATTGATGACTGGAACAGGCTGAACTGTGATGAGCGCCATTTCATAT 11737 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 | || | |||||||| || || |||||||| || || || || || | |||| Sbjct 11738 CGTACGTTCTTGCGTTCTTCGCAGCATCGGACGGCATTGTAAACGAAAACCTGCTGGAGA 11797 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | | ||||| || | ||||||||| || |||||||||||||||||| | Sbjct 11798 ACTTCTCACGTGAGGTACAGCTTAAGGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGA 11857 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 | ||||| || ||| || |||||| | || || || ||||| |||| ||| | || Sbjct 11858 TTGAGAACGTGCACAGCGAAATGTACTCGTTGCTGATTGACACGTATATCAAGGACCAGG 11917 Query 61382 CGGAACGTGAACGATT----GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437 ||| ||| || | ||||||||| || | | ||| |||||||| |||| Sbjct 11918 AGGA----GAAAGACTTCCTGTTCAATGCGATTGCTAACATAAACACGGTGAAGAGGAAG 11973 Query 61438 GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC-ATTTGGTGAACGATTGCT 61496 ||||| ||| ||| || ||||| | | |||| | || |||| | |||| || | Sbjct 11974 GCGGAGTGGTGCTTTAAATGGATAAACG--ACAAGGACTCTGATTTTGC-AACGCGTGTT 12030 Query 61497 G--GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 || |||||| || ||||| | || ||||| |||||||| || | ||||| ||| Sbjct 12031 ATTGCGTTTGCGTGTGTGGAGGGACTGTTCTTCAGCGGATCGTTCGCGTCCATCTTCTGG 12090 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 ||||||||||||| |||||||||||||| || || ||| ||||||||||| || || Sbjct 12091 CTGAAGAAACGTGGTCTTATGCCCGGTCTTACGTTTTCCAACGAGTTGATATCGCGTGAT 12150 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA-TCTGGTGAATCG-TC 61672 || ||| |||||| | || || ||| | ||| ||| || || |||||| | | Sbjct 12151 GAAGGCCTGCATTACCAATTCGCAGTTCT--TAT--GAACAATACGCTCGTGAATAGATG 12206 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 | | || | | | ||||||||| || || || || ||| |||| ||| Sbjct 12207 CCCCAAAGAAAAG-ATACTTGAGATTGTGAAGGATGCTGTGGAGATTGAAGAGGAGTTTG 12265 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 || | || |||||||||| ||||| ||||||||||| || | |||| ||||| | Sbjct 12266 TGTCCGATTCTTTGCCCGTGTCACTGATCGGCATGAACTGCAAGTTGATGTGCCAGTACA 12325 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA--TAC 61850 |||| || ||||| ||| | | | || ||| |||| | ||| | || || ||| Sbjct 12326 TTGAGTTCGTTGCTGACGGCATACTCGTTGATCTGGGCGTTGGGCGCAGGTACAACGTAC 12385 Query 61851 GAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGA 61910 |||| || |||||||||||||| | ||||||||| |||||||||||| || || || Sbjct 12386 --AAAATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGCAAGACGAACTTCTTTGA 12443 Query 61911 GAAACGTGTAGGCGACTATCA 61931 ||| | || | || ||||| Sbjct 12444 GAAGAGAGTTGCTGAGTATCA 12464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566497938400