Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 304 1e-77 seq16 105 5e-18 seq1 105 5e-18 >seq5 Length=183138 Score = 304 bits (336), Expect = 1e-77 Identities = 581/843 (69%), Gaps = 25/843 (3%) Strand=Plus/Plus Query 61082 AGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCG 61141 ||||| | |||| ||||||||| |||| | | || |||||||| ||||| || || | Sbjct 59357 AGGATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTG 59416 Query 61142 ATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATT 61200 || | || || || || |||| ||| | || || | || | | ||| | ||||| || Sbjct 59417 ATCTATCAAAGGATATTGATGATTGGAACCGGTTGAACG-GAGATGAGCGCCATTTTATA 59475 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--G 61258 | ||| | || |||||||| || |||||||||||||| || |||||| | ||| | Sbjct 59476 TCGTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAG 59535 Query 61259 AACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTG 61318 ||| | |||||| |||||||| | |||||||| || || |||||||| |||||| Sbjct 59536 AACTTCTCGCGC--GAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTA 59593 Query 61319 CCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 || ||||| || ||| || |||||| | || |||||||||||||| | ||| | Sbjct 59594 TGATCGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGATC 59653 Query 61379 GGGCGGAACGTGAACGA----TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | | ||| || | |||||||| || | | || |||||||| | Sbjct 59654 AGG----AAGAGAAGGACTTTCTTTTCAATGCGATTGCCAACATCAATACGGTGAAGAGA 59709 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || || || ||| ||| || ||||| | || | || |||| ||| | Sbjct 59710 AAGGCTGAGTGGTGCTTTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTGTT 59769 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || |||||| || ||||| | || || ||||||||||| || | ||||| ||| Sbjct 59770 ATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGG 59829 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 |||| ||||| || |||||||||||||| || ||| || |||||||||||||| ||| Sbjct 59830 CTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGAC 59889 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTT-TTGCTATTCAAACGCT-ATCTGGTGAATCGTC 61672 |||||| |||||| | | ||||||||| || | ||||||| ||| || ||| | | Sbjct 59890 GAGGGCCTGCATTATCAATTTGCTGTTCTTATGAACAAAACGCTCATC-GGCCAAT-GCC 59947 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 | || || || |||||||| ||||| || || ||| | || ||| Sbjct 59948 CAAAAGAAAAG---GTATTAGAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAGTTTG 60004 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 | ||||| ||||||| || ||||| ||||| ||||| || | |||| ||||| | Sbjct 60005 TCTCTGACTCTTTGCCTGTGTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAGTACA 60064 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA 61852 ||||||| ||||| || | | | || |||||||| || || | | || ||| Sbjct 60065 TTGAATTCGTTGCGGATGGAATACTTGTTGATTTGGGCATTGGACG--TGTGTACAACGT 60122 Query 61853 AA--AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGA 61910 || || || |||||||||||||| | ||||||||| ||| ||||||||||| || || Sbjct 60123 AACGAATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGGAAGACGAATTTCTTTGA 60182 Query 61911 GAA 61913 ||| Sbjct 60183 GAA 60185 >seq16 Length=116485 Score = 105 bits (116), Expect = 5e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||||||||| | |||| | | || | ||||| || |||||||||||||| || || Sbjct 65310 CAGCGACCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGC 65369 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGA 66425 ||| | ||||||||| || ||||||| | ||||| || ||||| | || |||| Sbjct 65370 TGTGAAAATATCGCGTGCACGCAGCTCCTCTTTACCCGTG-TTCTTGCGTATATCAAGGA 65428 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||||||||| |||| ||||| || || | |||||| || | ||| ||| ||||| Sbjct 65429 ACTCAAAGATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCT 65488 Query 66486 CGCCACCTTGGTCGACGTAGCG 66507 ||| ||||| || | | |||| Sbjct 65489 TGCCGCCTTGATCAATGCAGCG 65510 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 |||||| ||||| | |||||| | || ||||| ||||||| ||| || || || ||||| Sbjct 64716 CTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTGCAAAATGAATCGTTTCAAATATGCG 64775 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTC 65814 ||| | |||| ||||| | || |||||||| | || || |||||| || Sbjct 64776 CAAATTTACGGCACGCGCCTCCTTTGAATCATACGGCATCCTCAGCATCACAAAAACATC 64835 Query 65815 GGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || || || || ||||||| |||||||||||||| Sbjct 64836 AGCAAGGCCCTGCACTCCAAGGCCGATGGGACGATG 64871 >seq1 Length=243087 Score = 105 bits (116), Expect = 5e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||||||||| | |||| | | || | ||||| || |||||||||||||| || || Sbjct 194780 CAGCGACCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGC 194839 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGA 66425 ||| | ||||||||| || ||||||| | ||||| || ||||| | || |||| Sbjct 194840 TGTGAAAATATCGCGTGCACGCAGCTCCTCTTTACCCGTG-TTCTTGCGTATATCAAGGA 194898 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||||||||| |||| ||||| || || | |||||| || | ||| ||| ||||| Sbjct 194899 ACTCAAAGATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCT 194958 Query 66486 CGCCACCTTGGTCGACGTAGCG 66507 ||| ||||| || | | |||| Sbjct 194959 TGCCGCCTTGATCAATGCAGCG 194980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 |||||| ||||| | |||||| | || ||||| ||||||| ||| || || || ||||| Sbjct 194186 CTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTGCAAAATGAATCGTTTCAAATATGCG 194245 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTC 65814 ||| | |||| ||||| | || |||||||| | || || |||||| || Sbjct 194246 CAAATTTACGGCACGCGCCTCCTTTGAATCATACGGCATCCTCAGCATCACAAAAACATC 194305 Query 65815 GGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || || || || ||||||| |||||||||||||| Sbjct 194306 AGCAAGGCCCTGCACTCCAAGGCCGATGGGACGATG 194341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566163608560