Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq417 342 2e-91 seq1800 179 1e-42 seq2301 174 5e-41 seq3959 102 2e-19 seq890 102 2e-19 >seq417 Length=827 Score = 342 bits (378), Expect = 2e-91 Identities = 284/341 (83%), Gaps = 17/341 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||| || | ||| |||||| || |||||||||||||||||| Sbjct 333 GTACTCATTCCAATTGCAAGGCC-AGAAG-GCCCTGCATTGTTATTTATTGTCACTACCT 276 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 CCCCGAGTTGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 216 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTGGTCGCCATTGTA 156 Query 181 GGCCACTATCCTACCATCGAAAG-TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||||| | ||| ||| | || |||||||||||||| | ||||| ||| |||||||| Sbjct 155 AGCCACTACCTTACAATCAACAGCCTGATAGGGCAGAAAATCGAATGTACCGTCGCCGGC 96 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--------CCCGAAG 291 |||||||||||||| | | | |||||||||||||||| || | ||| || Sbjct 95 GCAAGGCCATGCGATCAGCTTAATTATTATGAATCACCATAGAACTGGTTTTACCC--AG 38 Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGT 332 | ||| |||| ||||||||| | || |||| ||||||| Sbjct 37 ---GATGG-TTTTGATCTAATAAGTGCAGCCCTCCCGAAGT 1 >seq1800 Length=217 Score = 179 bits (198), Expect = 1e-42 Identities = 177/223 (79%), Gaps = 17/223 (8%) Strand=Plus/Plus Query 228 ACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--- 284 ||| |||||||| |||||||||||||| | | | |||||||||||||||| || | Sbjct 2 ACCGTCGCCGGCGCAAGGCCATGCGATCAGCTTAATTATTATGAATCACCATAGAACTGG 61 Query 285 -----CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTT 339 ||| ||| ||||||| ||||||||| | || |||| |||||||| || | Sbjct 62 TTTTACCC--AGGA---TGGTTTTG-ATCTAATAAGTGCAGCCCTCCCGAAGTCAGGCCT 115 Query 340 TTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAA 397 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| Sbjct 116 TTTCTGCATGTATTAGCTCTAGAATTACCACGGTTATCCA-GTAGTAAAGTATTTGTCAT 174 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 || | ||||||||||||||||||||||||||||||| |||| Sbjct 175 GTAGATCATAACTGATTTAATGAGCCATTCGCAGTTTCGCTGT 217 >seq2301 Length=217 Score = 174 bits (192), Expect = 5e-41 Identities = 176/223 (79%), Gaps = 17/223 (8%) Strand=Plus/Minus Query 228 ACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--- 284 ||| |||||||| |||||||||||||| | | | |||||||||||||||| || | Sbjct 216 ACCGTCGCCGGCGCAAGGCCATGCGATCAGCTTAATTATTATGAATCACCATAGAACTGG 157 Query 285 -----CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTT 339 ||| ||| ||||||| ||||||||| | || |||| ||||||| || | Sbjct 156 TTTTACCC--AGGA---TGGTTTTG-ATCTAATAAGTGCAGCCCTCCCGAAGTTAGGCCT 103 Query 340 TTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAA 397 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| Sbjct 102 TTTCTGCATGTATTAGCTCTAGAATTACCACGGTTATCCA-GTAGTAAAGTATTTGTCAT 44 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 || | ||||||||||||||||||||||||||||||| |||| Sbjct 43 GTAGATCATAACTGATTTAATGAGCCATTCGCAGTTTCGCTGT 1 >seq3959 Length=217 Score = 102 bits (112), Expect = 2e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9 TTGCTTTTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 67 >seq890 Length=217 Score = 102 bits (112), Expect = 2e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9 TTGCTTTTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510319374848