Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq74 127 3e-24 seq24 122 1e-22 >seq74 Length=1162362 Score = 127 bits (140), Expect = 3e-24 Identities = 237/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 || || || || || ||||||||||| | ||||| || || || ||||| ||||| || Sbjct 830411 GAAACTCCACAAAAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAG 830470 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 ||||||| | |||||||| ||||| | ||| |||||| || |||| | | Sbjct 830471 TTATATGGTTACTGGATCACTGTCAACTATCGTGAATCCTATGATATGTATGCATGCAAT 830530 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 |||||||| |||||||||||| ||||| | || || || || ||| | |||||| Sbjct 830531 GGTATTCTCTTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATC 830590 Query 162676 GTCCGAGCCTTGTCCCGA-ATTAGTGTGGGAC-TCCAAAGTGATCTACAACTTGGAAACC 162733 || | || | | || || | |||||| || | | || | | | ||||| ||| Sbjct 830591 ACTCGTG-CTGTTGCTGATATCCATTTGGGACGTCAAGAATG-TTTGTATCTTGGTAACA 830648 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 | ||||| ||||| ||||| || || ||||| || || | |||||| | |||| Sbjct 830649 TTGATGCCAAGCGTGATTGGGGTCATGCTCGTGACTATGTCGAAGGCATGTGGCTCATGC 830708 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 |||| ||||| ||||| || || | ||| | || |||||||| Sbjct 830709 TTCAACAAGACAAGCCTGAAGACTTTGTTTTGGCCACTGGTGA 830751 >seq24 Length=199139 Score = 122 bits (134), Expect = 1e-22 Identities = 236/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 || || || || || ||||||||||| | ||||| || || || ||||| ||||| || Sbjct 183970 GAAACTCCACAAAAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAG 183911 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 ||||||| | |||||||| ||||| | ||| ||||||||| |||| | | Sbjct 183910 TTATATGGTTACTGGATCACTGTCAACTATCGTGAATCCTATGACATGTATGCATGCAAT 183851 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 ||||| || |||||||||||| ||||| | || || || || ||| | ||||| Sbjct 183850 GGTATCCTCTTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATT 183791 Query 162676 GTCCGAGCCTTGTCCCGA-ATTAGTGTGGGAC-TCCAAAGTGATCTACAACTTGGAAACC 162733 || | || | | || || | |||||| || | | || | | | ||||| ||| Sbjct 183790 ACTCGTG-CTGTTGCTGATATCCATTTGGGACGTCAAGAATG-TTTGTATCTTGGTAACA 183733 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 | ||||| ||||| |||||||| || || || || || | |||||| | |||| Sbjct 183732 TTGATGCCAAGCGTGATTGGGGACATGCACGTGATTATGTCGAAGGCATGTGGCTCATGC 183673 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 |||| ||||| ||||| || || | ||| | || |||||||| Sbjct 183672 TTCAACAAGACAAGCCTGAAGACTTTGTTTTGGCCACTGGTGA 183630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691458560400240