Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq83 102 5e-20 seq81 102 5e-20 seq66 102 5e-20 seq64 102 5e-20 seq51 102 5e-20 seq38 102 5e-20 seq75 98.7 6e-19 >seq83 Length=4747 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 4366 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 4421 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 4422 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 4478 >seq81 Length=6015 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 3151 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 3206 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 3207 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 3263 >seq66 Length=33588 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 6469 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 6524 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 6525 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 6581 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 17394 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 17449 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 17450 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 17506 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 28275 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 28330 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 28331 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 28387 >seq64 Length=41095 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 4459 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 4514 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 4515 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 4571 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 14829 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 14884 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 14885 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 14941 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 25233 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 25288 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 25289 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 25345 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 35838 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 35893 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 35894 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 35950 >seq51 Length=151171 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 5404 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 5459 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 5460 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 5516 >seq38 Length=339068 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 319448 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 319393 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 319392 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 319336 Score = 102 bits (112), Expect = 5e-20 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 330171 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 330116 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 330115 AATCGCTAGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 330059 >seq75 Length=10591 Score = 98.7 bits (108), Expect = 6e-19 Identities = 94/117 (80%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| |||| | |||| ||| || | | | ||| | || |||| Sbjct 5424 GAACCCAAAGACTTTACTTTCGC-TAAGCTGCTGAACCTGACCAAAGGTCAAG---GCCC 5369 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 5368 AATCGCTAGTCGGCATAGTTTT-GGTTAAGACTACGACGGTATCTAATCGTCTTCGA 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399754660