Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq18 145 1e-29 seq12 113 6e-20 >seq18 Length=557977 Score = 145 bits (160), Expect = 1e-29 Identities = 363/541 (67%), Gaps = 14/541 (3%) Strand=Plus/Minus Query 162303 AGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGA 162362 ||| ||||| |||| | || || || | || || |||||| ||||| || ||||| Sbjct 112405 AGTGCAACCTACTGAAGTGTACAATCTTGCTGCCCAATCTCACGTCAAGGTGTCCTTTGA 112346 Query 162363 TCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGT 162422 | | |||||||||| | | || || | || ||||| | | |||| || | Sbjct 112345 TATGTCTGAATACACTGGTGATGTGGATGCTCTCGGTACTCTCCGTTTATTAGATGCTAT 112286 Query 162423 CCGTCTTCTTGGTATGGAATCATA-CGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTT 162481 |||| ||| || || | || ||| | |||||||||| |||| || | | Sbjct 112285 CCGTACCTGTGG-ATTGACTGATCGCGTCCGTTTCTACCAAGCCTCCACCTCGGAATTGT 112227 Query 162482 ATGG---GCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCC 162538 | || | | ||| || || || || || |||||||| || | ||||| || |||| Sbjct 112226 ACGGTAAGGTCGTT---GAAACCCCTCAAAAGGAAACCACGCCCTTCTATCCCCGTTCCC 112170 Query 162539 CTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATG 162598 | ||||| || ||||| || ||||| | |||||| | || || | ||| ||| Sbjct 112169 CCTATGGTGTGGCTAAGCTCTATGGTTACTGGATTGTGGTCAATTATCGTGAATCCTACA 112110 Query 162599 ACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGT 162658 |||| |||||| || ||||||||| ||||| |||||| | ||| |||| || | Sbjct 112109 ACATGTATGCCTGTAACGGTATTCTCTTCAACCACGAATCTCCCCGCCGAGGCCGTACCT 112050 Query 162659 TCGTCACACGCAAGATCGTCCGAGCCTTGTC-CCGA-ATTAGTGTGGGACTCCAA-AGTG 162715 | || || ||||||||| ||| || |||| |||| || |||| | ||| | || Sbjct 112049 TTGTGACCCGCAAGATCTCCCGTGC--TGTCGCCGATATCCACTTGGGCCGTCAAGAATG 111992 Query 162716 ATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAG 162775 ||| | || || ||| | |||| ||||| ||||| || ||||| || ||||| | Sbjct 111991 -TCTGTACCTCGGTAACATTGATGCAAAGCGTGATTGGGGTCATGCCAAGGATTACGTTG 111933 Query 162776 AGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTG 162835 | | ||||||||||||||| || ||||| | || ||||| | ||| | || ||||||| Sbjct 111932 AAGGTATGTGGTTGATGCTGCAACAAGACCAACCTGATGACTTTGTATTGGCTACTGGTG 111873 Query 162836 A 162836 | Sbjct 111872 A 111872 >seq12 Length=2511101 Score = 113 bits (124), Expect = 6e-20 Identities = 234/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 || || || || || ||||||||||| | || || || ||||| ||||| || || || Sbjct 922789 GAAACCCCTCAAAAGGAAACCACTCCCTTCTACCCCCGTTCCCCCTATGGCGTGGCCAAG 922848 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 || || || | |||||| | |||||| | ||| || |||| | |||| || Sbjct 922849 CTCTACGGCTACTGGATTGTGGTCAACTACCGTGAATCTTACAACATGTACGCCTGTAAT 922908 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 ||||| || ||||| |||||| | || ||||| || ||||| || ||||||||| Sbjct 922909 GGTATCCTCTTCAACCACGAATCACCTCGTCGAGGACGTACCTTCGTGACTCGCAAGATC 922968 Query 162676 GTCCGAGCCTTGTCCCGA-ATTAGTGTGGGAC-TCCAAAGTGATCTACAACTTGGAAACC 162733 ||| ||| | | |||| || | |||| | || | | || ||| | | || || Sbjct 922969 TCCCGTGCCGT-TGCCGATATCCATTTGGGTCGTCAAGAATG-TCTGTATTTGGGTAATA 923026 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 | |||| ||||| ||||| || ||||| ||||| || || | ||||||||||||| Sbjct 923027 TTGATGCGAAGCGTGATTGGGGTCATGCCAAGGACTATGTGGAAGGTATGTGGTTGATGT 923086 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 | || ||||| | || || || | ||| | || ||||| || Sbjct 923087 TGCAACAAGATGAACCTGAAGACTTTGTATTGGCCACTGGCGA 923129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691458387535440