Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2538 167 4e-39 seq2552 147 3e-33 seq4577 116 6e-24 >seq2538 Length=3472 Score = 167 bits (184), Expect = 4e-39 Identities = 124/141 (88%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 52 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 109 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||| |||| |||| ||| | ||||||||| ||||| || ||||| |||||| Sbjct 110 CTCGTTGAAGTCCAATAATTACAAAGGACTATCCCCAGCACGACAAAGTTTCACAAGATT 169 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||| ||||| ||||||||| Sbjct 170 ACCCAGACCTTCCGGCCAAGG 190 >seq2552 Length=3450 Score = 147 bits (162), Expect = 3e-33 Identities = 113/130 (87%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 AGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGT 58 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTG 130 |||| |||| ||| | ||||||||| ||||| || ||||| |||||||||| ||||| Sbjct 59 CCAATAATTACAAAGGACTATCCCCAGCACGACAAAGTTTCACAAGATTACCCAGACCTT 118 Query 131 TCGGCCAAGG 140 ||||||||| Sbjct 119 CCGGCCAAGG 128 >seq4577 Length=1448 Score = 116 bits (128), Expect = 6e-24 Identities = 92/108 (85%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||||||||||||||||||||| ||||||||||| |||| |||| ||| | |||||||| Sbjct 1448 TGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGTCCAATAATTACAAAGGACTATCCCC 1390 Query 97 ATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGA 143 | ||||| || ||||| |||||||||| ||||| ||||||||| || Sbjct 1389 AGCACGACAAAGTTTCACAAGATTACCCAGACCTTCCGGCCAAGGGGA 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751960966970