Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2860 199 2e-48 seq1951 181 4e-43 seq4878 141 4e-31 seq3142 132 2e-28 seq2504 111 7e-22 >seq2860 Length=2964 Score = 199 bits (220), Expect = 2e-48 Identities = 149/175 (85%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||||| | ||||||| ||||||| | ||||||| Sbjct 2839 TTCAAAGAGTCGGTTTGTTTGGGAATGCAGACCAAAATGGGTGGTAAATACCATCTAAAG 2780 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 2779 CTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 2720 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 ||| ||||||||||||| || |||||||||||| |||||||| |||||| |||| Sbjct 2719 TTGAAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACC 2665 >seq1951 Length=4762 Score = 181 bits (200), Expect = 4e-43 Identities = 145/175 (83%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||||| | ||||||| ||||||| | ||||||| Sbjct 4009 TTCAAAGAGTCGGTTTGTTTGGGAATGCAGACCAAAATGGGTGGTAAATACCATCTAAAG 3950 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 3949 CTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 3890 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 || |||||||||| || |||||||||||| |||||||| |||||| |||| Sbjct 3889 TT-----GAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACC 3840 >seq4878 Length=1265 Score = 141 bits (156), Expect = 4e-31 Identities = 132/168 (79%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| ||||||||||||||| | |||||| |||||| | | |||| ||||||| Sbjct 1178 AGTCGGTTTGTTTGGGAATGCAAACCAAAATGGATAGTAAATACCATTTAAAACTAAATA 1119 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | || | ||||||||||| ||||||| |||| ||||||||||||| ||||| Sbjct 1118 CTAGCAATAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTT----- 1064 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 |||||||||| || |||||||||||| |||||||| |||||| |||| Sbjct 1063 GAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACC 1016 >seq3142 Length=2601 Score = 132 bits (146), Expect = 2e-28 Identities = 109/133 (82%), Gaps = 5/133 (4%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 ||||||| | |||||||||||||| |||| |||||||||||||| ||||||| |||| Sbjct 3 GGTAAATACCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAG 62 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||||||||||||| ||||| |||||||||| || |||||| |||| ||||||| Sbjct 63 GGAAAGATGAAAAGAACTTT-----GAGAGTTAAACAGTACGTGAGGTTGTCAAAAGGGA 117 Query 196 AGCGCTTGCAACC 208 | |||||| |||| Sbjct 118 AACGCTTGAAACC 130 >seq2504 Length=3529 Score = 111 bits (122), Expect = 7e-22 Identities = 93/114 (82%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| | || Sbjct 3529 TAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAATTT 3470 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 | |||| ||||| || |||||||||||| |||||||| |||||| |||| Sbjct 3469 T-----GAGAATTAAACAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACC 3421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079885070900