Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2538 208 1e-51 seq2552 190 4e-46 seq4577 149 1e-33 seq4857 100 5e-19 seq1925 84.2 4e-14 seq5108 82.4 1e-13 >seq2538 Length=3472 Score = 208 bits (230), Expect = 1e-51 Identities = 147/167 (88%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 163 TACACTGACAGAGCCAACGAGTTCATCACC-TTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 |||||||||| || || | |||| | || ||||||||||||||||||||||||||| | Sbjct 219 TACACTGACAAAGGCAGCAAGTTTTTTTCCCTTGGCCGGAAGGTCTGGGTAATCTTGTGA 160 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 |||| ||||||||||||||||| | ||| |||||||| |||||||||||||| ||||| Sbjct 159 AACTTTGTCGTGCTGGGGATAGTCCTTTGTAATTATTGGACTTCAACGAGGAATTCCTAG 100 Query 282 TAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 99 TAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 53 >seq2552 Length=3450 Score = 190 bits (210), Expect = 4e-46 Identities = 137/157 (87%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 163 TACACTGACAGAGCCAACGAGTTCATCACC-TTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 |||||||||| || || | |||| | || ||||||||||||||||||||||||||| | Sbjct 157 TACACTGACAAAGGCAGCAAGTTTTTTTCCCTTGGCCGGAAGGTCTGGGTAATCTTGTGA 98 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 |||| ||||||||||||||||| | ||| |||||||| |||||||||||||| ||||| Sbjct 97 AACTTTGTCGTGCTGGGGATAGTCCTTTGTAATTATTGGACTTCAACGAGGAATTCCTAG 38 Query 282 TAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 |||||||| ||||||||| |||||||||||||||||| Sbjct 37 TAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCT 1 >seq4577 Length=1448 Score = 149 bits (164), Expect = 1e-33 Identities = 114/134 (85%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 163 TACACTGACAGAGCCAACGAGTTCAT--CACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 |||||||||| | || | |||| | | ||||||||||||||||||||||||||||| Sbjct 1315 TACACTGACAAAAGCAGCAAGTTTTTTTCCCCTTGGCCGGAAGGTCTGGGTAATCTTGTG 1374 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||||| ||||||||||||||||| | ||| |||||||| |||||||||||||| |||| Sbjct 1375 AAACTTTGTCGTGCTGGGGATAGTCCTTTGTAATTATTGGACTTCAACGAGGAATTCCTA 1434 Query 281 GTAAGCGCGTGTCA 294 ||||||||| |||| Sbjct 1435 GTAAGCGCGAGTCA 1448 >seq4857 Length=1278 Score = 100 bits (110), Expect = 5e-19 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 163 TACACTGACAGAGCCAACGAGTTCATCACC-TTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 |||||||||| || || | |||| | || ||||||||||||||||||||||||||| | Sbjct 1184 TACACTGACAAAGGCAGCAAGTTTTTTTCCCTTGGCCGGAAGGTCTGGGTAATCTTGTGA 1243 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 |||| ||||||||||||||||| | ||| ||||| Sbjct 1244 AACTTTGTCGTGCTGGGGATAGTCCTTTGTAATTA 1278 >seq1925 Length=4851 Score = 84.2 bits (92), Expect = 4e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| Sbjct 4788 CCTTGACCGGAAGGTCTGGGTAATCTTGTGAAACTTTGTCGTGCTGGGGATAGTCCTTTG 4847 Query 251 CAAT 254 ||| Sbjct 4848 TAAT 4851 >seq5108 Length=1145 Score = 82.4 bits (90), Expect = 1e-13 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 163 TACACTGACAGAGCCAACGAGT-TCATCACCTTG-GCCGGAAGGTCTGGGTAATCTTGTT 220 || ||||||| | || | ||| | || |||| |||||||||||||||||||||||| Sbjct 94 TAAACTGACAAAAACAGCAAGTGTTTTCCCCTTTTGCCGGAAGGTCTGGGTAATCTTGTG 35 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||||||||||||||||| | ||| ||| Sbjct 34 AAACTTTGTCGTGCTGGGGATAGTCCTTTGTAAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947149249024