Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq244 239 4e-58 seq2381 233 2e-56 >seq244 Length=4003 Score = 239 bits (264), Expect = 4e-58 Identities = 744/1152 (65%), Gaps = 15/1152 (1%) Strand=Plus/Plus Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865 ||| ||||| || ||||||||||| || | |||||| || || |||||| || || || Sbjct 1802 AAATGTGTCTGCGAGACCTTGAACACCTAGACCGATAGGGCGGTGACGCTTGTTTGAGCG 1861 Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 | || ||| ||||| || || ||||||||||| || |||||| || | || | Sbjct 1862 TTCAGCTTCAATGACAGGATAATAGTTGATATCGATGATCTTATTCAAGTTTCTAGTGAT 1921 Query 65926 CACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCC 65985 || | |||| | |||| | | ||| || || || | | || Sbjct 1922 TACTTTAACGACATCATGCAACTTCTGGAAGTCGTAACTTTCACG----------GTT-- 1969 Query 65986 GGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGG 66045 |||| ||||| |||| | |||| || || | ||| |||||||| | || ||||| Sbjct 1970 -GACA--ACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAGACAGCAACTTCATCAGG 2026 Query 66046 AGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTG 66105 | || || |||||||| || |||| ||||| || || || ||||| || || Sbjct 2027 GCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTGATAGTACCCAAGTTTTG 2086 Query 66106 TTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAAC 66165 || |||||||| | || || |||||||| || | |||| | ||| | ||||| ||| Sbjct 2087 CTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATGGATTACCGGTTTCAGT 2146 Query 66166 TTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 ||| | |||| ||| || | ||| | ||||||| | || | || || || Sbjct 2147 TTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATTGTTTCTCTAGCTCTGCC 2206 Query 66226 TTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA 66285 || ||| || | |||||| | | || |||||||||||||| | || | Sbjct 2207 TTCCTTTTCATACTTTTCGTATAATGCAACAAATTCATCACCCCATACTTCACAAAGTCC 2266 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| | | ||||| | || ||||| ||||||| | |||||| ||| || Sbjct 2267 AGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTGTCACGTACACGCTCCATGAA 2326 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 |||||||||| ||| || || ||||| | || || |||| || || | || Sbjct 2327 GAGATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTCTAATTTCATCTTTACCAAA 2386 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || || | ||| || | ||| || || || | ||||||||||||| ||| || || Sbjct 2387 GTTCTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTGCCATGGTTCCAAGTACATAGC 2446 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | || ||| ||| ||||| || || || || ||||| |||||||||||| Sbjct 2447 AAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAACGAGCAGTATTGTTGAAGAC 2506 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 ||||||||| || | || || ||||| | || || || || | || || || Sbjct 2507 ACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATT 2566 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| || |||| ||| |||||||| || ||||| || || |||||| Sbjct 2567 GGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAGTCTTAGAAATTTGAGCACA 2626 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | | || | | || || || || || ||| |||| || |||| | | |||| Sbjct 2627 AATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCCTTCATAGTCAACAAGAAGCA 2686 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 ||| | ||| || || || | || ||| || || || | || || ||||| Sbjct 2687 AGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAA 2746 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 |||| | |||||| ||||| ||||| ||| | ||||| || | | ||||||||| Sbjct 2747 GTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCATCGATATCGTTGCCATGAAT 2806 Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885 || | ||| ||||| | | | ||| || | ||| | | | | | ||||| | Sbjct 2807 ACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTTCAGCAACCTTACCATTGATCTT 2866 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGC 66945 | ||||| || || || || ||||||| ||||||| | ||| |||||||| | | Sbjct 2867 GAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAGAAATTGTATTTGAAATCACGATC 2926 Query 66946 ATGCACGATGGC 66957 || | |||||| Sbjct 2927 ATAGATGATGGC 2938 Score = 140 bits (154), Expect = 3e-28 Identities = 332/496 (67%), Gaps = 32/496 (6%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || |||| ||| |||| | |||| | || | | ||||||||| ||||| Sbjct 1079 ATCGACGGTAAACTTGATGGCATCAACAGCAGGACGAGTACGCAAATAGTACATACCGGT 1138 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||| || ||||| ||||||| ||||| || ||||| || | || || || Sbjct 1139 CTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTTGTCAATTTACCAAAGTTAGGTTC 1198 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || | |||||||| ||||| ||||| |||||| ||||||||| |||||||| Sbjct 1199 AGCAATGAAGATATTCAAACTTTGACTTTGATCAATGTAAGCACCACGATCAGCAGCCAT 1258 Query 65257 GTCAATGA---TACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 |||| | |||| | | | || |||||||| || ||||| || || | || Sbjct 1259 ATCAACCAATGTACGCTGACTCAAT---TCCCAGACTGTTTTGTA-----GATGTCCTTC 1310 Query 65314 AATT-----GGAATCTCCTCAATGTCCTGGACTGAACCAC-----GACGTGCAATAATGC 65363 || | ||||| | ||||| || |||||||||| ||| || || ||| Sbjct 1311 AACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCAGACATG--ATCATGT 1368 Query 65364 GATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGAC--- 65420 || |||| || ||||||||||| || | | || | |||| | | Sbjct 1369 TCTT-GACATC--ATCGTTCCACAAACCCATTTCAACCAAATCCT---TCAAGAGCCATG 1422 Query 65421 GATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGG 65480 | |||| | |||||| ||||| | || |||||||| ||||| |||||| ||| | Sbjct 1423 GGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAGGTGTAAG 1482 Query 65481 GTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGA 65540 |||| || ||||| || || | ||||| | ||||| ||||||||||| ||||| | Sbjct 1483 GTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATAGGAGCAA 1542 Query 65541 CCAACAATGAGTTTCG 65556 |||| | |||||| || Sbjct 1543 CCAAGAGTGAGTTACG 1558 >seq2381 Length=15399 Score = 233 bits (258), Expect = 2e-56 Identities = 568/850 (67%), Gaps = 13/850 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| ||||||||||| ||||| | || || | || |||||||| ||| Sbjct 11448 TACAAAAAGGCTGAAGCTTCCTTTTGGACTGCTGAAGAAATTGACTTGTCCAAGGACCAA 11389 Query 61159 AATGACTGGGAGCGTTTATCGAGCGGTGAACAAC-ATT--TCATTAAACATGTGTTGGCG 61215 | || |||||| | || | | | ||| ||| |||| | ||| ||||| Sbjct 11388 CACGATTGGGAGAACAAAATGAACAGCAACGAACGATTCTTCATCTCTCGTGTCTTGGCC 11329 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||||||| | | || ||| | |||||||| || || | || ||| | || Sbjct 11328 TTCTTTGCCAGTGCTGATGGTGTAGTCAATGAAAACTTGGTTCAAAACTTCTGTGATGAA 11269 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || | | | || || |||||||| || ||||| ||||| || ||||| |||| Sbjct 11268 GTAAAGATCCCTGAAGCCAAATGTTTCTATGGTTTCCAAATTGCTATTGAGAACATCCAT 11209 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 | || | |||||| | | || || || ||||||| || ||| || Sbjct 11208 GCCGAAACCTACAGTTTGTTGATTGACACCTACATCAAAGATAATCAAGAAAAGGAGATG 11149 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||| |||| ||||| || || || | ||||| || || |||||||| ||||| Sbjct 11148 TTGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAAG 11089 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | ||| ||| || | |||| ||| |||||| | || ||||| | ||||| Sbjct 11088 TGGATCTCTGGTA--ACGACT-CTTTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAA 11032 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 ||| | || ||| ||| || |||||| | ||||| ||| | ||||| ||||| || ||| Sbjct 11031 GGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATG 10972 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 || ||| |||| ||| || || | || | || || || || | || ||| ||| Sbjct 10971 CCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTT 10912 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| | | | |||| | | || ||| ||| || | || ||| | ||| Sbjct 10911 GCTTGTCTCTTGTTCACTCAC---CTCAAGAAGATTCCTTCTGCCGAACGTATCAA-GAG 10856 Query 61696 -ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || || |||||| || ||| ||||| ||||| ||||||| ||||| || ||| Sbjct 10855 CATCATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGACTGATGCTTTACCTGTCAA 10796 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 | || || ||||| | || |||| || || |||||||| || ||||| ||| | Sbjct 10795 CTTGATTGGTATGAACGCTAAGCTTATGTGCCAATACATTGAATTCGTCGCCGATCGTTT 10736 Query 61815 GTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGG 61873 | |||| | |||| | ||| | ||||| ||| | | ||||| ||||||||||||| Sbjct 10735 GATGGTTGCCCTTGGCTTTGATAAG-ATCTACAATGCCACTAACCCCTTTGATTTCATGG 10677 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAAC 61933 |||||||||| || | |||||||| || || || ||||| ||||| ||||| |||| Sbjct 10676 ACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGTTTCTGACTACCAAC 10617 Query 61934 GTTTGGGTGT 61943 || ||||| Sbjct 10616 GTGCTGGTGT 10607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554365156960