Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2727 98.7 3e-16 >seq2727 Length=50161 Score = 98.7 bits (108), Expect = 3e-16 Identities = 120/158 (76%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 2773 GTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACT 2832 || || |||||||| |||||||||||||| | || || ||||| ||| || | || Sbjct 28349 GTCTCTCACCGTTCTGGTGAAACTGAAGACACCACCATTGCTGACCTTGTTGTCGGT-CT 28407 Query 2833 AACG--CTGGTCAAATTAAGACAGGT--TCATTGTCACGTACTGACCGTATTGCTAAATA 2888 || |||||||||| ||||| ||| || ||||| || | || ||| |||| || || Sbjct 28408 C-CGTACTGGTCAAATCAAGACTGGTGCTCCTTGTC--GTTCCGAACGTCTTGCCAAGTA 28464 Query 2889 CAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAG 2926 ||||||| | || ||||||||||| |||||||||||| Sbjct 28465 CAACCAACTTCTCCGTATCGAAGAAGAACTTGGTGAAG 28502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156033185781816