Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq2120 152 7e-32 >seq2120 Length=25072 Score = 152 bits (168), Expect = 7e-32 Identities = 361/538 (67%), Gaps = 8/538 (1%) Strand=Plus/Plus Query 162303 AGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGA 162362 ||||||||| |||| |||| ||| | | ||||| |||||| |||||||| || || Sbjct 11161 AGTTCAACCCACTGAAGTATACAACTTGGCTGCTCAATCTCACGTCAAGGTTTCTTTCGA 11220 Query 162363 TCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGT 162422 | | |||||||||| | | || || | || ||||| | | | || ||| | Sbjct 11221 TATGTCTGAATACACTGGTGATGTTGATGCCCTTGGTACTCTTCGTCTCTTGGATGCCAT 11280 Query 162423 CCGTCTTCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTT 162480 |||| | |||| | | | | | || | |||||||||| ||| ||| || Sbjct 11281 CCGTACTTGTGGTCTTGCTGACCGT--GTTCGTTTCTACCAAGCTTCTACCTCTGAACTC 11338 Query 162481 TATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCT 162540 || || ||| || || || || || |||||||| ||| | || || || || || Sbjct 11339 TACGGTAAGGTTGTCGAAACCCCTCAAAAGGAAACCACACCATTTTACCCTCGTTCTCCC 11398 Query 162541 TATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGAC 162600 ||||| ||||| || || ||||| | |||||| | |||||| | ||| ||||||| Sbjct 11399 TATGGTGTTGCCAAGCTCTATGGTTACTGGATTGTAGTCAACTACCGTGAATCCTATGAC 11458 Query 162601 ATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTC 162660 || |||||| || |||||| || ||||| |||||| | || | || || ||| Sbjct 11459 ATGTATGCCTGTAACGGTATCCTCTTCAACCACGAATCTCCTCGTCGTGGTCGTACTTTC 11518 Query 162661 GTCACACGCAAGATCGTCCGAGCCTTGTCCCGA-ATTAGTGTGGGAC-TCCAAAGTGATC 162718 |||||||| ||||| || | || | | || ||| | |||| | || | | || || Sbjct 11519 GTCACACGTAAGATTACTCGTG-CTGTTGCTGATATTCATTTGGGTCGTCAAGACTG-TC 11576 Query 162719 TACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGG 162778 | | ||||| ||| | ||||| ||||| ||||| || ||| || || || || | Sbjct 11577 TCTACCTTGGTAACATTGATGCCAAGCGTGATTGGGGTCATGCCCGTGATTATGTTGAAG 11636 Query 162779 CTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 ||||||| | |||||||| ||||| ||||| | || | ||| | || |||||||| Sbjct 11637 GTATGTGGCTCATGCTTCAACAAGACAAGCCTCAAGACTTTGTCTTGGCTACTGGTGA 11694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691434877922640