Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1958 89.7 2e-12 seq2316 84.2 8e-11 >seq1958 Length=30361 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 364423 ACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCC 364482 |||||| ||||||||||| ||||||| | |||| ||||| || | ||||| || || Sbjct 18828 ACCAATGGTCATACGAGAAGGAATGGCGTGAGGATTGATAATCAAATCAGGTGTGATACC 18887 Query 364483 GTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 ||||| | || || | |||||| || || | | ||||||||| |||||||| | Sbjct 18888 TTCAGCAGAGAAAGGAACATCTTCTTGACGATAAGTAATACCAATGGTACCCTTTTGACC 18947 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| ||||||||||| || || Sbjct 18948 GTGACGAGAGGCAAACTTGTCACCCAT 18974 >seq2316 Length=60053 Score = 84.2 bits (92), Expect = 8e-11 Identities = 250/382 (65%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 12605 TCTCTTTCTCCAATAAGGTTGATGGTGTCTTTGGTATCTGGAACGTGCAAGGTTACAAAG 12664 |||||||| ||||| | ||| |||| |||| || || || || || | | |||||| Sbjct 43650 TCTCTTTCGCCAATCATGTTCTTGGTCTCTTCTGTCTCAGGCACATGGAGAGAGACAAAG 43709 Query 12665 TCGGAACGAGAC-AAG-AGACCTTGCAGAGTAGACACTTGCTTACTGTTGCCTAGAGGTA 12722 || || || || ||| || ||| || | || ||||| | ||| | ||| | Sbjct 43710 TCAGA--GATACTAAGCAGGTCTTCAAGGGATTCAACCTGCTTGGCTTGGCCAATAGGCA 43767 Query 12723 GTTTCTTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGA 12782 ||| || |||||||||||| | || |||| || | ||||| | |||||| | Sbjct 43768 TGATCTGAAGTACATCGTAAAAGTAGACAGTCATACCCATGGCTTCTGCCAAGACAGACA 43827 Query 12783 CCTGAGAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGC 12842 ||||||||||| | |||||||| || ||||| | ||| | || ||| | Sbjct 43828 GTTGAGAACCAATATGGCCATAACCAACGATACCCAATACCTTGTGACGAATCTCATAAC 43887 Query 12843 AACCTTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCT 12902 | || | || ||| ||||||| || ||||| | |||| |||| | || || | | Sbjct 43888 AGCCCTTTGATACCTTATTCCAAACACCCTGGTGCATTTCTGTGTTACGGTCGCCCAATT 43947 Query 12903 GACGAGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAA 12962 |||||| | | |||| || || |||| | ||||| || ||||| || | | Sbjct 43948 GACGAGCCAATGTGATTAATTCACCAATGACTAATTCTGCGACTGATCTAGAATTACTGA 44007 Query 12963 AGGGAGAATTAAAGACTGCAAT 12984 | || ||||| ||||| ||||| Sbjct 44008 AAGGTGAATTGAAGACAGCAAT 44029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884818441598902