Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq61 264 9e-66 seq33 161 8e-35 >seq61 Length=186913 Score = 264 bits (292), Expect = 9e-66 Identities = 742/1127 (66%), Gaps = 33/1127 (3%) Strand=Plus/Plus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 || ||||| ||||| || || | || | || ||||| || || || | ||||| || Sbjct 184025 AAGGTGTCAGCCAGGCCCTGGATGCCCAAGCCAATGGGGCGGTGGCGAAGGTTGGATCG- 184083 Query 65867 CTCG-CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 |||| ||||| || ||||| ||||||| |||||| || ||||||||||| || | Sbjct 184084 CTCGGCCTCAATGACGGGGTAATAATTGACATCGATGATCTTGTTCAAATTGCGCGTGAT 184143 Query 65926 CACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCC 65985 ||| | || | | |||||| | ||||||||| || | | ||| | Sbjct 184144 CACCTTGACAACCTGGTGCAATTTCTTGAAATCAAAC-GTCTTG------CGGTTG---- 184192 Query 65986 GGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGG 66045 || || | || | |||| || | |||||| || || ||||| || || Sbjct 184193 ----ACGACGTATGATGGCAACGCAATGCTGGCCAAGTTGCACACGGCAATCTCATCGGG 184248 Query 66046 AGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTG 66105 | || |||||||| || ||||||| ||| ||||| |||||||| | ||||| Sbjct 184249 GCTCGAGTATTCGACAATCTCCGTGCACAAATTGCTGCATTTGATGGTGCCGAGGTTCTG 184308 Query 66106 TTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAAC 66165 || || ||||| ||||| || |||||||||| ||| ||||| |||| ||||| Sbjct 184309 CTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAAGATGAACGGATTGCCCGTCTCGGT 184368 Query 66166 TTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA-----CGTACCGCC 66220 |||| ||| | || |||| ||| | | ||||| | ||| || || ||| Sbjct 184369 CTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGCCTTGATCGTCTGGCGCGCACGGCC 184428 Query 66221 CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGAC 66280 || ||||| ||||| | ||| | | | ||||| || ||||| || ||| | Sbjct 184429 CT-CCTTT----TCGTACTTTTCAAACAAGGCCTCGAATTCATCGCCCCACACCTCGTGC 184483 Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 | | || || || || || | |||||||| || |||| || ||||| | Sbjct 184484 AAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCATTGGCCTCGACACGCTTC 184543 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 || || | |||||| | |||||| ||||| || | |||||| || || ||| || || Sbjct 184544 ATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCGCGCGCGCGGATCTCGTCCTTG 184603 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 || || |||||||| || | || || |||||||| ||||| || || ||||| Sbjct 184604 CCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGCTCGAGGTAC 184663 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 ||||| |||| ||| || ||| || |||||||| |||||||| || |||||| Sbjct 184664 ATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCAACGTAGCGCGCCGTGTTGTTG 184723 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGAT 66580 || || |||| ||| || | || || || | |||||||||||||| | ||| || Sbjct 184724 AACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCATTGGTGCCGGCAATGTACGAG 184783 Query 66581 CCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 || ||| || || || | ||| | |||| ||||| || ||||||||||| ||||| Sbjct 184784 CC-CGTGGCGCGGATGTTGTGGATGTTCAAGCCAATGCCGCCGGCCGTCTTGGAGATTTG 184842 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 ||||| | ||| | | ||||| ||||| ||||| |||| || ||||| | Sbjct 184843 CGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAA 184902 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | |||| || | ||| || || ||| |||| ||| | || || | ||||| Sbjct 184903 GAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCATTGAACAACGTCGGGCTCGCGTG 184962 Query 66760 CGTAAAGTAATGGC-GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGC 66818 ||| ||| ||| || |||||| | ||||||||| | | |||||||||| ||||| Sbjct 184963 CGTGAAG-AATCGCTCCGACATGAGCTGGTACGTCTCCAAAGCGGCATCAATGTCTTCGC 185021 Query 66819 CATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC 66877 |||| || || | | |||| ||||| | | | || || || || ||| | | Sbjct 185022 CATGGATACCAACAGCCACA-CGCATGATCAAATGCTGCGGACGCTCCGCCACCTTGCCA 185080 Query 66878 TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 ||||| | | || || || || || || ||||||| |||||| || Sbjct 185081 TTGATCTTGAGCAAATATGAACGCTCGAGCGTCTTGAAACCAAAATA 185127 >seq33 Length=455653 Score = 161 bits (178), Expect = 8e-35 Identities = 344/508 (68%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAA 61488 ||||| || || || ||||| ||| |||||| | || |||| | || |||| || Sbjct 391288 AAGCGCAAGGCCGACTGGGCATTCCGCTGGATCTCGAG--CAACAAC-ACGTTTGCCGAG 391232 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || | | || ||||||| ||| ||||| | || ||| ||| ||||||| | ||| Sbjct 391231 CGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTTGCGTCCATC 391172 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||| | ||||| || || | ||||| || |||| ||| ||| ||| |||| | Sbjct 391171 TTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAGCTGATTTGC 391112 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668 || |||||||| |||| || ||||| |||| || || ||||| || Sbjct 391111 CGTGACGAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTG---GCCATCTGCGCAAC 391055 Query 61669 CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728 || || | || |||||| | || || | ||||| || | || || || ||| Sbjct 391054 ACGCCTTCCAATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATTGAGCAAGAA 390995 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 || ||||| ||||| |||| ||| | ||||| |||||||| | || |||| || Sbjct 390994 TTCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGCTCATGTGCCAA 390935 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAA 61847 || |||||||||||||| ||||| ||| | || | | |||| | || | | ||| || Sbjct 390934 TACATTGAATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGGCCAGGACAAGCA-CTACAA 390876 Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 | | || || ||||| || |||||| | || ||||| | |||||||| ||||| || Sbjct 390875 GGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGACCAATTTCTT 390816 Query 61908 CGAGAAACGTGTAGGCGACTATCAACGT 61935 ||||| ||||| ||||| || ||| Sbjct 390815 TGAGAAGCGTGTCTCTGACTACCAGCGT 390788 Score = 113 bits (124), Expect = 4e-20 Identities = 196/282 (70%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| || || ||||| ||||||| |||||| | ||| ||||||| ||| | Sbjct 391692 TACAAAAAGGCAGAGGCGTCCTTTTGGACGGCCGAGGAGATTGATCTGTCCAAGGACCTT 391633 Query 61159 AATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAACATGTGTTGGCG 61215 |||||||||| || | ||| | | | |||||| || | ||||| Sbjct 391632 GGTGACTGGGAGAACAAGATGACTGCTGACGAGCGCTACTTCATTTCGCACATTCTGGCG 391573 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 |||||||| ||||| || || ||||| ||||| || || || ||| | | ||| Sbjct 391572 TTCTTTGCAAGCTCGGATGGCATTGTCAACGAGAACTTGGTGCAAAACTTCATGGACGAG 391513 Query 61276 GTGCAAG-TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || |||| | | ||||| || || || |||||||| || || |||||| |||| Sbjct 391512 GT-CAAGATTGCCGAGGCAAAGTGCTTTTATGGCTTCCAAATCATGATTGAGAATATCCA 391454 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||| |||| ||||| | ||||| ||||| ||||||| ||| Sbjct 391453 CTCCGAGACCTACAGCTTGCTCATTGATACCTACATCAAGGA 391412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567278041360