Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq38 343 1e-89 seq34 179 3e-40 seq25 87.8 1e-12 >seq38 Length=1275103 Score = 343 bits (380), Expect = 1e-89 Identities = 759/1133 (67%), Gaps = 25/1133 (2%) Strand=Plus/Plus Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 |||||| | ||| | |||||||||||||| || || | ||| ||||| || |||||| Sbjct 988488 CATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGACCAATGGGGCGGTGACGCTT 988547 Query 65857 ATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATT 65916 ||||| ||| ||||| ||||||||||| ||||| ||||| || |||| || Sbjct 988548 GTTGGAGCGTTCGGCCTCGATGACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAGGTT 988607 Query 65917 GCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGA 65974 ||| || | || | || || | ||| | | || |||||| ||| Sbjct 988608 GCGGGTAATGACCTTGGTGA--CGGCATGCAGCTTCTTAAAGTCAAAAG----AGG---- 988657 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 ||| | || ||| | |||||| || | | || |||||||| || || Sbjct 988658 -------TGCGGTTGACGACATAGGAGGGAAGAGCGATACTGGCCAGGTTGCACACGGCG 988710 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 || || ||||| || ||||||||||||||||| ||||| |||||||| |||||| Sbjct 988711 ATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACTGCACTTGATGGTG 988770 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || | || ||||| || ||||| ||||| ||||| || |||| ||| | || || Sbjct 988771 CCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTATACAGCATAAAGGGGTTG 988830 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT 66214 ||||| || ||||| || |||||||||| ||| || | ||||| | ||| | Sbjct 988831 CCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTTGGGCCTTGATCGTTTGG 988890 Query 66215 ACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT 66274 || | |||| ||||||| | | || || | |||||| || ||||||||| Sbjct 988891 CGAGCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAATTCATCGCCCCATACT 988950 Query 66275 TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACA 66334 ||| ||||| || | || ||||| | ||||||||| || || | ||| ||| Sbjct 988951 TCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGCCGTTGGCTTCCACA 989010 Query 66335 CGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCC 66394 || ||| || |||||||| | ||| || || ||||| ||||| || || || || Sbjct 989011 CGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCACGGGCACGGATTTCG 989070 Query 66395 TCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCC 66454 || ||||| || ||||| | ||| | || |||| ||||| ||||| |||||| Sbjct 989071 TCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCC 989130 Query 66455 AGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACA 66514 ||||| ||||| || | || ||| ||| ||||||||| ||||||||||| || Sbjct 989131 AGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTG 989190 Query 66515 TTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||||||||||| || | ||| || | ||| ||||| || | ||| |||||||| | ||| Sbjct 989191 TTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATG 989250 Query 66575 GGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG 66634 || || || || || | ||| | || |||||||| || || || ||||| ||| Sbjct 989251 TAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAG 989310 Query 66635 ATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTC 66694 || |||||| | || | | ||||| || || ||||| |||| |||||| Sbjct 989311 ATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTC 989370 Query 66695 AGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTA 66754 | |||| |||| || | ||| || || ||| |||| |||||| || || | Sbjct 989371 AAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTG 989430 Query 66755 GCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTT 66814 || || || ||| | | ||||| | | ||| || || | ||||||| |||| Sbjct 989431 GCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCG 989490 Query 66815 TCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCG 66873 ||||| |||||||||| | |||| ||||| | | || |||||| || || ||| | Sbjct 989491 TCGCCGTGAATCCCGACGGCCACA-CGCATGATCAAGTGTTGAGGACGCTCAGCCA--CT 989547 Query 66874 ATCC--TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 ||| ||||| | | || || || |||||||| || |||| |||||||| Sbjct 989548 TTCCCATTGATCTTGAGCAAATAAGACCGTTCCAGAGTTTTGAAGCCAAAGTA 989600 >seq34 Length=381833 Score = 179 bits (198), Expect = 3e-40 Identities = 350/510 (69%), Gaps = 8/510 (2%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || || || ||||||||| ||||||| |||| |||| || | |||| |||||| ||| Sbjct 50137 AAGGCTGAATGGGCCTTCCGTTGGATCTCCAG--CAACACCTCC-TTTGCTGAACGCTTG 50081 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 |||| ||||| | ||||| ||| | || ||| || | |||||| | ||||| ||| Sbjct 50080 GTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCCATCTTCTGG 50021 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 |||||||| || || | ||||| ||| |||||||| ||| || |||| | |||||| Sbjct 50020 TTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCGCGAC 49961 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 || ||| | || || ||||| | |||| |||| | | ||| || | || Sbjct 49960 GAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTCAGCCAC-ATCCAT--AAGCAACCC 49904 Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734 || ||| | || || || || || || | |||||||| ||||| | Sbjct 49903 AGCTCCGAACGTATCACGGAAATCATTGTCGAAGCCGTCAAGATCGAACAAGAATTCTTA 49844 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 || || || ||||| ||| | | || ||||||||| | |||| || || ||| Sbjct 49843 ACCGATGCCTTGCCTGTCGCCTTGATTGGCATGAATGCCACGTTGATGTGCCAATACATT 49784 Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT-ATGAAGCGGATCTATAATACGAA 61853 ||||| ||||| ||||||||| |||||| ||||| | ||| || | || || | | Sbjct 49783 GAATTCGTTGCTGACCGTCTGCTGGTCGCCTTGGGCCAAGAAAAGG-TGTACAAATCCAT 49725 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| ||||| || |||||||||||||| || | |||||||| || || || || || Sbjct 49724 CAACCCCTTTGACTTTATGGACATGATTTCTCTCCAAGGCAAGACCAACTTCTTTGAAAA 49665 Query 61914 ACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||||| || ||||||||| ||||| Sbjct 49664 GCGTGTGTCTGATTATCAACGTGCTGGTGT 49635 >seq25 Length=485700 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGC-CTTGGTCCTAAGATAGTACATGCCGG 65135 ||| || ||||| | ||| |||| |||| | | || || || | ||||||||||||| Sbjct 239115 ATCAACGGTGAATTTGATGGCATCGACAGCAGGGCGTGATCGTAGG-TAGTACATGCCGG 239057 Query 65136 TCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCT 65195 |||||||||| ||| || || || ||||| || | | || || | | |||| Sbjct 239056 TCTTGAGGCCCTTTTTCCAGGCGTAAAAGTGCATGGAGGTCAGCTTGCCAAAGGTAGGCT 238997 Query 65196 CGGCCACATGCATA--TTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 || ||| || | | |||| || || ||||||||| || ||||||||| ||||| Sbjct 238996 CG-CCAG-TGAACAAGTTCATGGATTGGGACTGATCGATAAAAGCACCACGATCGGCAGC 238939 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG 65301 |||||| ||||| ||| || || ||||| ||||||||||| || Sbjct 238938 CATGTCGATGATCACCCGTTGAGAGATTTCCCACACGGTCTTGTAAAG 238891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567447628960