Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq29 399 9e-109 seq64 102 3e-19 seq87 86.0 3e-14 >seq29 Length=11094 Score = 399 bits (442), Expect = 9e-109 Identities = 272/305 (89%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||| || |||||||||| ||| || ||||||||| ||||||||||||||||||||| Sbjct 2310 TAGGATGTTGACGTAATGGTTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 2251 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| |||| |||||||||||| ||||||| | ||||||||||||||||||| ||||| | Sbjct 2250 CATACATGCAAGTGTTTGGGTGGCAAACCCATACGCGTAATGAAAGTGAACGTAGGTGCG 2191 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | || | |||||| |||||||||||| |||| | || |||| ||||||||||||||| Sbjct 2190 ATCCGC--AAGGTGCAGCATCGACCGATCTTGATATTTTTGGATAGATTTGAGTAAGAGC 2133 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2132 ATGCATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 2073 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 2072 CTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 2013 Query 679 GGCGA 683 ||||| Sbjct 2012 GGCGA 2008 Score = 230 bits (254), Expect = 1e-57 Identities = 157/177 (89%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| Sbjct 2820 TTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAG 2761 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 2760 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 2701 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||| ||| || ||||||||||||||||||||| || ||| |||||| Sbjct 2700 TTGAAAAGAGAGTAAAATAGTGCGTGAAATTGTTGAAAGGGAAACGTTTGAAACCAG 2644 >seq64 Length=490145 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||| |||| ||||||| |||||| ||| |||||| Sbjct 322155 TTCAAAGAGTCGGGTTGTTTGGGAATGTGGCTCAAAATGGGTGGTAAACTTCATCTAAAA 322214 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACA 124 |||||||| ||| ||||||||||| || ||| Sbjct 322215 CTAAATATCGGCGAGAGACCGATACCGAACA 322245 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||| |||| ||||||| |||||| ||| |||||| Sbjct 325218 TTCAAAGAGTCGGGTTGTTTGGGAATGTGGCTCAAAATGGGTGGTAAACTTCATCTAAAA 325159 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACA 124 |||||||| ||| ||||||||||| || ||| Sbjct 325158 CTAAATATCGGCGAGAGACCGATACCGAACA 325128 >seq87 Length=303942 Score = 86.0 bits (94), Expect = 3e-14 Identities = 115/159 (72%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||||| |||| | | |||| ||||||| || | ||| || |||| || ||||||| Sbjct 276227 CCGATCTTGATATTATTGGATAAATTTGAGCAATACCATGCATGCTGGGGCCTGAAAGAT 276286 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 | | || || |||||||| |||||||||| || ||| || ||| ||| || Sbjct 276287 GATTGACCATATTTGAATAGG------CCAGAGGAAAGTCCGGTAAAGACTCATAGCAGT 276340 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||| ||||| || || | ||||||||||| ||||||| Sbjct 276341 TCTGATGTGCATATTGACCATCAAATTTGGG-ATAGGGG 276378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997039900