Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq211 682 0.0 seq1560 174 5e-41 seq1253 75.2 4e-11 >seq211 Length=6561 Score = 682 bits (756), Expect = 0.0 Identities = 458/508 (90%), Gaps = 5/508 (1%) Strand=Plus/Minus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 6556 TGAGTCCCCCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTC 6497 Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGCC-CGCGAAGGA-CCTTAACGCCAGAAAA 155 |||||||||||||||| | |||| ||||||| || ||| | |||||| || |||| | Sbjct 6496 CCCACCTGACAATGTCTTTAACCTAGATCGGCTGCGTAAAGCAACCTTAATGCTAGAAGA 6437 Query 156 TGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 || |||| || || | | ||| | ||||||||||||| ||| |||||||||| Sbjct 6436 AGGAAAATGAATTCCGCCTCTACCTAATTAAATAAGTAAAAAAACAATACGGGTAGTGGT 6377 Query 216 ATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG 275 || ||||| |||||||| ||||||||||||||| |||| | | ||| |||||||| | Sbjct 6376 ATCTCACTGGCGCCGAA---GCTCCCACTTATTCTGCACCCCATATGTCTTTTCACAATG 6320 Query 276 TCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTC 335 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 6319 TCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTC 6260 Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6259 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 6200 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6199 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 6140 Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6139 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 6080 Query 516 AATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||| ||||||||| Sbjct 6079 AATCACATTGCGTCAACACCACTTTCTG 6052 >seq1560 Length=18069 Score = 174 bits (192), Expect = 5e-41 Identities = 172/220 (78%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 18064 TGAGTCCCCCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTC 18005 Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGC-CCGCGAAG-GACCTTAACGCCAGAAAA 155 |||||||||||||||| | |||| ||||||| || ||| ||||||| || |||| | Sbjct 18004 CCCACCTGACAATGTCTTTAACCAAGATCGGCTGCGTAAAGCAACCTTAATGCTAGAAGA 17945 Query 156 TGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 || |||| || || | | ||| | ||||||||||| | ||| ||| Sbjct 17944 AGGAAAATGAATTCCGCCTCTACCTAATTAAATAAGTAAAAAAGCAATA-------CGGT 17892 Query 216 ATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACC 255 | ||||| |||||||| ||||||||||||||| |||| Sbjct 17891 GTCTCACTGGCGCCGAA---GCTCCCACTTATTCTGCACC 17855 >seq1253 Length=67324 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||| | | | ||||||| |||||||||| |||| ||||| ||| ||| |||| Sbjct 62188 GACAGTTGAAGTATCGTTAAACCATTCATGCACGTCGGCAATTATCCGACTAGGTATTTC 62247 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||| || ||||||||||| |||| || ||| Sbjct 62248 GCTACCTTAGGACTGTCATAGTTACAGCCGCTATTGACC 62286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635167917376