Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mucor_20circinelloides_20[genbank_20GCA_5F001276145.1_202015-08-31] 821 sequences; 35,338,886 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq403 372 1e-100 seq377 246 1e-62 seq408 197 6e-48 >seq403 Length=9977 Score = 372 bits (412), Expect = 1e-100 Identities = 251/279 (90%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 308 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 249 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||| |||||||| || | ||||||||||||||| ||| Sbjct 248 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCAATC 191 Query 528 CTGATGTCTTCGGAT---GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 || | ||||| ||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 190 CTCACGTCTTTAGATCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGGT 131 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 130 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCT 71 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||||||||||||||||||||| Sbjct 70 GACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 32 Score = 210 bits (232), Expect = 9e-52 Identities = 145/164 (88%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| | Sbjct 713 TTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGG 654 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||| Sbjct 653 CTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACT 594 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||||||| || ||||||||||| ||||||||| Sbjct 593 TTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 550 >seq377 Length=12034 Score = 246 bits (272), Expect = 1e-62 Identities = 225/281 (80%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCA 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 5589 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTAGAA 5648 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | ||||| ||| ||| || ||||| ||| ||||||||| |||| Sbjct 5649 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCTCACGGGTGCACCGCCGAC 5705 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| ||||||| |||| ||||||||||||||| Sbjct 5706 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATG 5765 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 5766 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 5825 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 5826 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 5866 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 5202 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 5261 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 5262 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 5321 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 5322 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 5366 >seq408 Length=9762 Score = 197 bits (218), Expect = 6e-48 Identities = 154/181 (85%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAA 92 ||| | ||||| |||||||||||||||||| |||||| ||| ||||||| || ||||| Sbjct 245 TTCAAAGAGTCAGGTTGTTTGGGAATGCAGC-CTAAATTGGGTGGTAAATCTCACCTAAA 187 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||||| || |||||||||||||| ||||||| |||| ||||||||||||| || Sbjct 186 GCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAAC 127 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGAC 212 |||| ||||||||||||| || | ||||||||||| |||||||| || ||| | |||||| Sbjct 126 TTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGAC 67 Query 213 T 213 | Sbjct 66 T 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079982389550