Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1762 291 1e-76 seq838 291 1e-76 seq837 291 1e-76 seq614 291 1e-76 >seq1762 Length=16400 Score = 291 bits (322), Expect = 1e-76 Identities = 213/241 (88%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 2601 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 2544 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 2543 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 2484 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 2483 ACCCAGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 2426 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 2425 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 2366 Query 239 A 239 | Sbjct 2365 A 2365 Score = 291 bits (322), Expect = 1e-76 Identities = 213/241 (88%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 12361 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 12304 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 12303 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 12244 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 12243 ACCCAGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 12186 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 12185 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 12126 Query 239 A 239 | Sbjct 12125 A 12125 >seq838 Length=3790 Score = 291 bits (322), Expect = 1e-76 Identities = 213/241 (88%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 2574 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 2631 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 2632 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 2691 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 2692 ACCCAGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 2749 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 2750 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 2809 Query 239 A 239 | Sbjct 2810 A 2810 >seq837 Length=3795 Score = 291 bits (322), Expect = 1e-76 Identities = 213/241 (88%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 2666 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 2609 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 2608 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 2549 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 2548 ACCCAGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 2491 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 2490 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 2431 Query 239 A 239 | Sbjct 2430 A 2430 >seq614 Length=7828 Score = 291 bits (322), Expect = 1e-76 Identities = 213/241 (88%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 537 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 594 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 595 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 654 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 655 ACCCAGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 712 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 713 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 772 Query 239 A 239 | Sbjct 773 A 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751986748585