Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1762 165 5e-39 seq1070 165 5e-39 seq838 165 5e-39 seq837 165 5e-39 seq614 165 5e-39 seq1009 127 1e-27 seq1 107 1e-21 seq979 86.0 3e-15 >seq1762 Length=16400 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 2069 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 2011 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2010 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1953 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 11829 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 11771 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11770 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 11713 >seq1070 Length=181604 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 161451 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 161509 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 161510 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 161567 >seq838 Length=3790 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 3106 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 3164 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3165 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 3222 >seq837 Length=3795 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 2134 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 2076 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2075 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2018 >seq614 Length=7828 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 1069 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 1127 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1128 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1185 >seq1009 Length=239540 Score = 127 bits (140), Expect = 1e-27 Identities = 95/109 (87%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||| ||||||||| |||| | |||| | |||||| ||| | | | ||| | Sbjct 133396 GAACCCAAAAACTCTGATTTCTCATAAGATACCGAACAAGTCAATAATTA-ATCGTCGTC 133454 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 133455 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGAT 133503 >seq1 Length=1837611 Score = 107 bits (118), Expect = 1e-21 Identities = 92/107 (86%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 13 TTTGATTT-CTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCCCGATCCCTAGT 70 |||||||| ||| ||||||| ||| |||||||| || | ||||| | ||||||||||| Sbjct 683863 TTTGATTTTCTCATAAGGTGTCGAACGAGTCAATCATTA-AACATTGTTCGATCCCTAGT 683921 Query 71 CGGCATAGTTTACGG-TTAAGACTACGACGGT-ATCTGATCGTCTTC 115 |||||||||||| || |||||||||| ||||| |||||||||||||| Sbjct 683922 CGGCATAGTTTATGGTTTAAGACTACTACGGTAATCTGATCGTCTTC 683968 >seq979 Length=271034 Score = 86.0 bits (94), Expect = 3e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||| Sbjct 200807 GATCTCTAGTCGGCATAGTTTATGGTTAAGACTACGACCGTATCTGATCGTTTTCGA 200863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395252410