Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1762 365 8e-99 seq838 365 8e-99 seq837 365 8e-99 seq614 365 8e-99 seq979 280 3e-73 seq1070 268 2e-69 seq1 149 1e-33 seq956 86.0 1e-14 >seq1762 Length=16400 Score = 365 bits (404), Expect = 8e-99 Identities = 264/301 (88%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 1653 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 1712 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 1713 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 1772 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1773 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 1831 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 1832 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 1891 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 1892 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 1950 Query 318 G 318 | Sbjct 1951 G 1951 Score = 365 bits (404), Expect = 8e-99 Identities = 264/301 (88%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 11413 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 11472 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 11473 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 11532 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 11533 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 11591 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 11592 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 11651 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 11652 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 11710 Query 318 G 318 | Sbjct 11711 G 11711 >seq838 Length=3790 Score = 365 bits (404), Expect = 8e-99 Identities = 264/301 (88%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 3522 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 3463 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 3462 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 3403 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3402 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 3344 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 3343 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 3284 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 3283 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 3225 Query 318 G 318 | Sbjct 3224 G 3224 >seq837 Length=3795 Score = 365 bits (404), Expect = 8e-99 Identities = 264/301 (88%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 1718 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 1777 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 1778 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 1837 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1838 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 1896 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 1897 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 1956 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 1957 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 2015 Query 318 G 318 | Sbjct 2016 G 2016 >seq614 Length=7828 Score = 365 bits (404), Expect = 8e-99 Identities = 264/301 (88%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 1485 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 1426 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 1425 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 1366 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1365 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 1307 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 1306 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 1247 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 1246 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 1188 Query 318 G 318 | Sbjct 1187 G 1187 >seq979 Length=271034 Score = 280 bits (310), Expect = 3e-73 Identities = 219/255 (86%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 68 AGGACTTTT-ACTTTGAAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 ||||||||| ||||||||||||||| ||||| | ||||||||| | ||| |||| |||| Sbjct 201117 AGGACTTTTTACTTTGAAAAAATTAAGAGTGCTTAAAGCAGGCTTATGCCTGAATTCATT 201058 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 ||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||| Sbjct 201057 AGCATGGAATAATAGAATAGGACTTT-GGTTCTATTTTGTTGGTTCCTAGGACCGAAGTA 200999 Query 186 ATGATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||| | ||| | | | |||||| |||| ||||||||||||||||| Sbjct 200998 ATGATTAATAGGGATAATTGGGAGGGCATTAGTATTTAATTATCAGAGGTGAAATTCTTA 200939 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||||||| |||| ||||| ||||||||| || |||||||||||||||||||||| Sbjct 200938 GATTTATGAAAGATTAACTTCTGCGAAAGTATTTGCCAAGGATGTTTTCATTAATCA-AA 200880 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 200879 AACGAAAGTTAGGGG 200865 >seq1070 Length=181604 Score = 268 bits (296), Expect = 2e-69 Identities = 181/200 (91%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 161766 ATACATTAGCATGGAATAATAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGAC 161708 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||||||||||||| ||||| | |||||| |||||||||||||||||| Sbjct 161707 CGAAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAAT 161648 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||| ||||||| |||||||||| |||||||||| || |||||||||||||||||||| Sbjct 161647 TCTTAGATTTATGAAAGACTAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAT 161588 Query 299 CAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||| Sbjct 161587 CA-AGAACGAAAGTTAGGGG 161569 >seq1 Length=1837611 Score = 149 bits (164), Expect = 1e-33 Identities = 108/124 (87%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 44 CTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG 103 ||||| || |||| | ||||| | ||||||||||||||||||||||||||||||| |||| Sbjct 1382459 CTTCATTGTGTGTACTGGGGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAG 1382518 Query 104 CAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163 ||||| | | || ||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 1382519 CAGGCTTATACTTGAATACATTAGCATGAAATAATAGAATAGGAC-TTTGGTTCTATTTC 1382577 Query 164 GTTG 167 |||| Sbjct 1382578 GTTG 1382581 >seq956 Length=291166 Score = 86.0 bits (94), Expect = 1e-14 Identities = 96/127 (76%), Gaps = 10/127 (8%) Strand=Plus/Plus Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 |||| ||| ||||||||||||| |||||| |||||||| | | | |||||||||| Sbjct 209869 GACTCTTATTTTGAAAAAATTAAAGTGTTAGAAGCAGGCTTATATTTAAATACATTAG-- 209926 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTC-TAGGACCGCCGTAATG 188 |||| |||| ||| | | |||||||||||| ||||| |||||||| | |||| Sbjct 209927 ------AATAAAATAAGAC-TTTGATTCTATTTTGTTAGTTTCTTAGGACCGAAGCAATG 209979 Query 189 ATTAATA 195 || |||| Sbjct 209980 ATAAATA 209986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915183352512