Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1762 102 5e-20 seq838 102 5e-20 seq837 102 5e-20 seq614 102 5e-20 >seq1762 Length=16400 Score = 102 bits (112), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||||| ||||| | | ||||||||||||| || ||||||||| ||||||||||| ||| Sbjct 2656 AGCCAAT-CCGAAGGAT-TCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 2601 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||||||||||||||||||||| |||||| || Sbjct 2600 TACAAAGGGCAGGGACGTAAT-CAACGCGAG 2571 Score = 102 bits (112), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||||| ||||| | | ||||||||||||| || ||||||||| ||||||||||| ||| Sbjct 12416 AGCCAAT-CCGAAGGAT-TCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 12361 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||||||||||||||||||||| |||||| || Sbjct 12360 TACAAAGGGCAGGGACGTAAT-CAACGCGAG 12331 >seq838 Length=3790 Score = 102 bits (112), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||||| ||||| | | ||||||||||||| || ||||||||| ||||||||||| ||| Sbjct 2519 AGCCAAT-CCGAAGGAT-TCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 2574 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||||||||||||||||||||| |||||| || Sbjct 2575 TACAAAGGGCAGGGACGTAAT-CAACGCGAG 2604 >seq837 Length=3795 Score = 102 bits (112), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||||| ||||| | | ||||||||||||| || ||||||||| ||||||||||| ||| Sbjct 2721 AGCCAAT-CCGAAGGAT-TCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 2666 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||||||||||||||||||||| |||||| || Sbjct 2665 TACAAAGGGCAGGGACGTAAT-CAACGCGAG 2636 >seq614 Length=7828 Score = 102 bits (112), Expect = 5e-20 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||||| ||||| | | ||||||||||||| || ||||||||| ||||||||||| ||| Sbjct 482 AGCCAAT-CCGAAGGAT-TCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 537 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||||||||||||||||||||| |||||| || Sbjct 538 TACAAAGGGCAGGGACGTAAT-CAACGCGAG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300794870420