Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1762 158 1e-36 seq838 158 1e-36 seq837 158 1e-36 seq614 158 1e-36 seq1 127 2e-27 seq979 120 4e-25 seq1070 77.0 4e-12 >seq1762 Length=16400 Score = 158 bits (174), Expect = 1e-36 Identities = 120/138 (87%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 1809 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 1751 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||| |||||||||||||| |||| ||||||||||| | ||| | | | Sbjct 1750 AGCATAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTA 1691 Query 126 CAC-CAATGAAG-GCATA 141 ||| |||||||| ||||| Sbjct 1690 CACACAATGAAGTGCATA 1673 Score = 158 bits (174), Expect = 1e-36 Identities = 120/138 (87%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 11569 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 11511 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||| |||||||||||||| |||| ||||||||||| | ||| | | | Sbjct 11510 AGCATAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTA 11451 Query 126 CAC-CAATGAAG-GCATA 141 ||| |||||||| ||||| Sbjct 11450 CACACAATGAAGTGCATA 11433 >seq838 Length=3790 Score = 158 bits (174), Expect = 1e-36 Identities = 120/138 (87%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 3366 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 3424 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||| |||||||||||||| |||| ||||||||||| | ||| | | | Sbjct 3425 AGCATAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTA 3484 Query 126 CAC-CAATGAAG-GCATA 141 ||| |||||||| ||||| Sbjct 3485 CACACAATGAAGTGCATA 3502 >seq837 Length=3795 Score = 158 bits (174), Expect = 1e-36 Identities = 120/138 (87%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 1874 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 1816 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||| |||||||||||||| |||| ||||||||||| | ||| | | | Sbjct 1815 AGCATAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTA 1756 Query 126 CAC-CAATGAAG-GCATA 141 ||| |||||||| ||||| Sbjct 1755 CACACAATGAAGTGCATA 1738 >seq614 Length=7828 Score = 158 bits (174), Expect = 1e-36 Identities = 120/138 (87%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 1329 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 1387 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||| |||||||||||||| |||| ||||||||||| | ||| | | | Sbjct 1388 AGCATAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTA 1447 Query 126 CAC-CAATGAAG-GCATA 141 ||| |||||||| ||||| Sbjct 1448 CACACAATGAAGTGCATA 1465 >seq1 Length=1837611 Score = 127 bits (140), Expect = 2e-27 Identities = 104/124 (84%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 14 CAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAG 73 |||| |||||| || | |||||||||||||||| ||||||||||||||| | |||| Sbjct 1382581 CAACGAAATAGA-ACCAAAGTCCTATTCTATTATTTCATGCTAATGTATTCAAGTATAAG 1382523 Query 74 CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC-CAAT 132 |||||||| |||||||||||||| |||| ||||||||||| | ||| | | |||| |||| Sbjct 1382522 CCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTAGATCCCCAGTACACACAAT 1382463 Query 133 GAAG 136 |||| Sbjct 1382462 GAAG 1382459 >seq979 Length=271034 Score = 120 bits (132), Expect = 4e-25 Identities = 95/110 (86%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||| |||||||||||||| || | ||||||||||||||||||||||||||| |||| Sbjct 201009 CTAGGAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGAATTCA 201067 Query 66 GGCGTAAGCCTGCTTTGAACACTC-TAATTTTCTCAAGGT-AAAAGTCCT 113 ||| |||||||||||| | ||||| ||||||| |||| || ||||||||| Sbjct 201068 GGCATAAGCCTGCTTTAAGCACTCTTAATTTTTTCAAAGTAAAAAGTCCT 201117 >seq1070 Length=181604 Score = 77.0 bits (84), Expect = 4e-12 Identities = 52/57 (91%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTAT 62 ||||||||||||||||||| || | |||||||||||||||||||||||||||||| Sbjct 161711 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTAT 161766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595189511646