Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1762 228 8e-58 seq838 228 8e-58 seq837 228 8e-58 seq614 228 8e-58 seq979 178 1e-42 seq1070 156 4e-36 seq1 122 9e-26 seq956 75.2 1e-11 >seq1762 Length=16400 Score = 228 bits (252), Expect = 8e-58 Identities = 166/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| Sbjct 1697 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATA 1756 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 1757 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 1814 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 1815 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 1874 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 1875 TTAGATTTAT 1884 Score = 228 bits (252), Expect = 8e-58 Identities = 166/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| Sbjct 11457 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATA 11516 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 11517 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 11574 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 11575 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 11634 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 11635 TTAGATTTAT 11644 >seq838 Length=3790 Score = 228 bits (252), Expect = 8e-58 Identities = 166/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| Sbjct 3478 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATA 3419 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 3418 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 3361 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 3360 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 3301 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 3300 TTAGATTTAT 3291 >seq837 Length=3795 Score = 228 bits (252), Expect = 8e-58 Identities = 166/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| Sbjct 1762 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATA 1821 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 1822 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 1879 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 1880 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 1939 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 1940 TTAGATTTAT 1949 >seq614 Length=7828 Score = 228 bits (252), Expect = 8e-58 Identities = 166/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| Sbjct 1441 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATA 1382 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 1381 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 1324 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 1323 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 1264 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 1263 TTAGATTTAT 1254 >seq979 Length=271034 Score = 178 bits (196), Expect = 1e-42 Identities = 156/188 (83%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 7 AGGACTTTT-ACTTTGAAAAAATTA-GAGCGTTCAAAGCAGGCCTTTGCTCGAATACATT 64 ||||||||| ||||||||||||||| ||| | | ||||||||| | ||| |||| |||| Sbjct 201117 AGGACTTTTTACTTTGAAAAAATTAAGAGTGCTTAAAGCAGGCTTATGCCTGAATTCATT 201058 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | ||||||||||||||||||||| | ||||||||||||| |||| ||||||||| || Sbjct 201057 AGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTCCTAGGACCG-AAGT 201000 Query 125 AATGATAAATACGGATAGTCGG--GGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||| |||| ||||| | || ||| | |||||| |||| ||| ||||||||||||| Sbjct 200999 AATGATTAATAGGGATAATTGGGAGGGCATTAGTATTTAATTATCAGAGGTGAAATTCTT 200940 Query 183 GGATTTAT 190 ||||||| Sbjct 200939 AGATTTAT 200932 >seq1070 Length=181604 Score = 156 bits (172), Expect = 4e-36 Identities = 116/133 (87%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 161766 ATACATTAGCATGGAATAATAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGAC 161708 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| |||| ||||||| ||||| | |||||| |||||||| |||||||| Sbjct 161707 CGAA-GTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAA 161649 Query 178 TTCTTGGATTTAT 190 ||||| ||||||| Sbjct 161648 TTCTTAGATTTAT 161636 >seq1 Length=1837611 Score = 122 bits (134), Expect = 9e-26 Identities = 90/104 (87%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | | || ||||| Sbjct 1382477 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATACTTGAATA 1382536 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT 104 ||||| |||| |||||||||||||||| | |||||||||| || Sbjct 1382537 CATTAGCATGAAATAATAGAATAGGAC-TTTGGTTCTATTTCGT 1382579 >seq956 Length=291166 Score = 75.2 bits (82), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 |||| ||| ||||||||||||| || ||| |||||||| | | | ||||||||| Sbjct 209869 GACTCTTATTTTGAAAAAATTAAAGTGTTAGAAGCAGGCTTATATTTAAATACATTA--- 209925 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTC-TAGGACCGCCCGTAAT 127 |||||| |||| ||| | | ||||||||||| ||||| |||||||| | ||| Sbjct 209926 --GAATAA---AATAAGAC-TTTGATTCTATTTTGTTAGTTTCTTAGGACCG-AAGCAAT 209978 Query 128 GATAAATA 135 |||||||| Sbjct 209979 GATAAATA 209986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511990977760