Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1762 306 7e-81 seq838 306 7e-81 seq837 306 7e-81 seq614 306 7e-81 >seq1762 Length=16400 Score = 306 bits (338), Expect = 7e-81 Identities = 259/315 (82%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG----CTTC 75 || ||||||||||||||||||||||| | || || | ||| | |||| Sbjct 2288 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATGTTTTCTATTCGTGGTTTAACTTC 2347 Query 76 TTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 2348 TTAGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 2407 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| Sbjct 2408 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCAACGAGTT--TCATCCT 2465 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || |||||||||||||||||||| | ||||| ||||||||||||||| | |||||| Sbjct 2466 TGATCGGAAGGTCTGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGTCCCTTGCAA 2525 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||| |||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 2526 TTTTTGGACTTTAACGAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACG 2585 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 2586 TCCCTGCCCTTTGTA 2600 Score = 306 bits (338), Expect = 7e-81 Identities = 259/315 (82%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG----CTTC 75 || ||||||||||||||||||||||| | || || | ||| | |||| Sbjct 12048 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATGTTTTCTATTCGTGGTTTAACTTC 12107 Query 76 TTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 12108 TTAGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 12167 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| Sbjct 12168 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCAACGAGTT--TCATCCT 12225 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || |||||||||||||||||||| | ||||| ||||||||||||||| | |||||| Sbjct 12226 TGATCGGAAGGTCTGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGTCCCTTGCAA 12285 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||| |||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 12286 TTTTTGGACTTTAACGAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACG 12345 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 12346 TCCCTGCCCTTTGTA 12360 >seq838 Length=3790 Score = 306 bits (338), Expect = 7e-81 Identities = 259/315 (82%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG----CTTC 75 || ||||||||||||||||||||||| | || || | ||| | |||| Sbjct 2887 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATGTTTTCTATTCGTGGTTTAACTTC 2828 Query 76 TTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 2827 TTAGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 2768 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| Sbjct 2767 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCAACGAGTT--TCATCCT 2710 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || |||||||||||||||||||| | ||||| ||||||||||||||| | |||||| Sbjct 2709 TGATCGGAAGGTCTGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGTCCCTTGCAA 2650 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||| |||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 2649 TTTTTGGACTTTAACGAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACG 2590 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 2589 TCCCTGCCCTTTGTA 2575 >seq837 Length=3795 Score = 306 bits (338), Expect = 7e-81 Identities = 259/315 (82%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG----CTTC 75 || ||||||||||||||||||||||| | || || | ||| | |||| Sbjct 2353 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATGTTTTCTATTCGTGGTTTAACTTC 2412 Query 76 TTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 2413 TTAGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 2472 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| Sbjct 2473 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCAACGAGTT--TCATCCT 2530 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || |||||||||||||||||||| | ||||| ||||||||||||||| | |||||| Sbjct 2531 TGATCGGAAGGTCTGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGTCCCTTGCAA 2590 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||| |||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 2591 TTTTTGGACTTTAACGAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACG 2650 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 2651 TCCCTGCCCTTTGTA 2665 >seq614 Length=7828 Score = 306 bits (338), Expect = 7e-81 Identities = 259/315 (82%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG----CTTC 75 || ||||||||||||||||||||||| | || || | ||| | |||| Sbjct 850 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATGTTTTCTATTCGTGGTTTAACTTC 791 Query 76 TTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 790 TTAGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 731 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| Sbjct 730 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCAACGAGTT--TCATCCT 673 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || |||||||||||||||||||| | ||||| ||||||||||||||| | |||||| Sbjct 672 TGATCGGAAGGTCTGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGTCCCTTGCAA 613 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||| |||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 612 TTTTTGGACTTTAACGAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGCGTTGATTACG 553 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 552 TCCCTGCCCTTTGTA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182770432