Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1762 695 0.0 seq837 695 0.0 seq614 695 0.0 seq1001 205 3e-50 seq1565 203 1e-49 seq324 167 7e-39 seq1598 147 7e-33 seq838 136 1e-29 seq914 100 9e-19 seq1621 78.8 3e-12 >seq1762 Length=16400 Score = 695 bits (770), Expect = 0.0 Identities = 466/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 1482 GTTCTCATTCCAATTACAAGACT-AAAATAGCCCTGTATCGTTATTTATTGTCACTACCT 1424 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1423 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 1364 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 1363 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 1304 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1303 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 1244 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 1243 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 1189 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 1188 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTACGCATGTATTA 1129 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 1128 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 1069 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 1068 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 1009 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1008 TAATCTTTGAGACAAGCATATGACTACTGGCAG 976 Score = 695 bits (770), Expect = 0.0 Identities = 466/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 11242 GTTCTCATTCCAATTACAAGACT-AAAATAGCCCTGTATCGTTATTTATTGTCACTACCT 11184 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 11183 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 11124 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 11123 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 11064 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 11063 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 11004 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 11003 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 10949 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 10948 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTACGCATGTATTA 10889 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 10888 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 10829 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 10828 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 10769 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 10768 TAATCTTTGAGACAAGCATATGACTACTGGCAG 10736 >seq837 Length=3795 Score = 695 bits (770), Expect = 0.0 Identities = 466/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 1547 GTTCTCATTCCAATTACAAGACT-AAAATAGCCCTGTATCGTTATTTATTGTCACTACCT 1489 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1488 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 1429 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 1428 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 1369 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1368 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 1309 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 1308 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 1254 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 1253 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTACGCATGTATTA 1194 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 1193 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 1134 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 1133 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 1074 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1073 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1041 >seq614 Length=7828 Score = 695 bits (770), Expect = 0.0 Identities = 466/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 1656 GTTCTCATTCCAATTACAAGACT-AAAATAGCCCTGTATCGTTATTTATTGTCACTACCT 1714 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1715 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 1774 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 1775 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 1834 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1835 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 1894 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 1895 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 1949 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 1950 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTACGCATGTATTA 2009 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 2010 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 2069 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 2070 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 2129 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 2130 TAATCTTTGAGACAAGCATATGACTACTGGCAG 2162 >seq1001 Length=248500 Score = 205 bits (226), Expect = 3e-50 Identities = 164/194 (85%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 313 AAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||| | ||||| ||||| ||||||| ||||||||||| |||||||| ||| ||| Sbjct 186981 AAATACGACTCTTCCAGAAGTGAGGGTTTTATGCATGTATTAGTTCTAGAATAACCGCGG 187040 Query 372 TTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||||||| ||||||| |||||||||||||||| |||| || ||||||||| ||||||| Sbjct 187041 TTATCCAAGTAGTAACGGTACTATCAAATAAAATATAATTGCTTTAATGAGTCATTCGCC 187100 Query 431 GTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||| ||||| |||| |||||||||||||| || ||||||||||||||| ||| | Sbjct 187101 GTTTCACAATATAGAATTGTATATACTTAGACATGTATAGCTTAATCTTTGAGAGAAGTA 187160 Query 490 TATGACTACTGGCA 503 ||||||||| ||| Sbjct 187161 AATGACTACTTGCA 187174 >seq1565 Length=615886 Score = 203 bits (224), Expect = 1e-49 Identities = 166/198 (84%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 309 TAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 ||| |||||| | ||||| ||||| ||||||| ||||||||||| |||||||| ||| Sbjct 494737 TAAGAAATACGACTCTTCCAGAAGTGAGGGTTTTATGCATGTATTAGTTCTAGAATAACC 494678 Query 368 ACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 |||||||||| ||||||| |||||||||||||||| |||| || ||||||||| |||| Sbjct 494677 GCGGTTATCCAAGTAGTAACGGTACTATCAAATAAAATATAATTGCTTTAATGAGTCATT 494618 Query 427 CGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 ||| ||||||| ||||| |||| |||||||||||||| || |||||| |||||||| | Sbjct 494617 CGCCGTTTCACAATATAGAATTGTATATACTTAGACATGTATAGCTTAACCTTTGAGAGA 494558 Query 486 AGCATATGACTACTGGCA 503 || | ||||||||| ||| Sbjct 494557 AGTAAATGACTACTTGCA 494540 >seq324 Length=463316 Score = 167 bits (184), Expect = 7e-39 Identities = 155/193 (80%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 313 AAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||| | ||||| ||||| ||| ||| ||| |||||| |||||||| || ||| Sbjct 424852 AAATACGGCTCTTCCAGAAGTGAGGGATTTATACATATATTAGTTCTAGAATAACATCGG 424911 Query 372 TTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||||||| ||||||| |||||||||||||||| |||| || |||| |||| ||||| | Sbjct 424912 TTATCCAAGTAGTAACGGTACTATCAAATAAAATATAATTGCTTTAGTGAGTCATTCACT 424971 Query 431 GTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||| |||||| ||| |||||||||||||| || |||||| ||||||| ||| | Sbjct 424972 ATTTCACAATATAGAATTGTATATACTTAGACATGTATAGCTTAACTTTTGAGAGAAGTA 425031 Query 490 TATGACTACTGGC 502 |||||||||| || Sbjct 425032 TATGACTACTTGC 425044 >seq1598 Length=1230784 Score = 147 bits (162), Expect = 7e-33 Identities = 112/130 (86%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 |||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||| Sbjct 1036371 TTGGTTTTTTATCTAATAAATACAACCCTTCCTGAAGTCGGGTTTAAACGCATGTATTAG 1036312 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGAT 413 || |||||||| ||| |||||||| || |||| || |||||||||||| |||||| || Sbjct 1036311 CTTTAGAATTAACACAGTTATCCAAGTGGTAATAGTGCTATCAAATAAATTATAACTAAT 1036252 Query 414 TTAATGAGCC 423 |||||||||| Sbjct 1036251 TTAATGAGCC 1036242 >seq838 Length=3790 Score = 136 bits (150), Expect = 1e-29 Identities = 89/97 (92%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 3693 GTTCTCATTCCAATTACAAGACT-AAAATAGCCCTGTATCGTTATTTATTGTCACTACCT 3751 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGC 97 ||| ||||| ||||||||||||||||||||||||||| Sbjct 3752 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGC 3788 >seq914 Length=353171 Score = 100 bits (110), Expect = 9e-19 Identities = 129/176 (73%), Gaps = 13/176 (7%) Strand=Plus/Plus Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 ||| |||| || ||||||| |||| | ||||||||||||||||||| | || | |||| | Sbjct 24603 TATTCTACTATTGAAAGTTAATAGAGTAGAAATTTGAATGAACCATTGTCGACACAAGAC 24662 Query 247 CATGCGATTCGTTAAGTTATTATGAA----TCACCAAGGA------GCCC--CGAAGGGC 294 ||| | ||||| || |||||||||| |||| || | ||| || || Sbjct 24663 CATACAATTCGAAAAATTATTATGAACCTTTCACTAAAAACTAATTACCCAAAGATGGTT 24722 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGT 349 || ||||||||||||| |||||| || |||| |||||| || ||||| ||||| Sbjct 24723 TTTTTTTTTTTATCTAATGAATACAACCATTCCAGAAGTCTGGCTTTTTCACATGT 24778 >seq1621 Length=598311 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| |||||||| |||||||||||||||||| |||||||| || Sbjct 297123 ATACTTAGACATGTATGGCTTAGTCTTTGAGACAAGCATATAACTACTGGAAG 297071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510372525824