Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1787 84.2 7e-12 >seq1787 Length=553948 Score = 84.2 bits (92), Expect = 7e-12 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2773 GTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACT 2832 || || |||||||| |||||||||||||| | || |||||| ||| |||| | Sbjct 548843 GTTTCTCACCGTTCTGGTGAAACTGAAGACACTTTCATTGCTGATCTTGTTGTTGGTCTT 548902 Query 2833 AACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAAC 2892 || ||||||||| ||||| ||| | | ||| | || | | ||||| |||||| Sbjct 548903 AAGAGTGGTCAAATCAAGACTGGTGCTCCATGCCGTTCCGAAAGATTAGCTAAGTACAAC 548962 Query 2893 CAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 ||| | || ||||||||||| ||||||||| Sbjct 548963 CAACTTCTCCGTATCGAAGAAGAACTTGGTG 548993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156035029473036