Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1376 280 2e-73 seq15509 279 8e-73 seq15113 82.4 1e-13 >seq1376 Length=1996 Score = 280 bits (310), Expect = 2e-73 Identities = 206/232 (89%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 1267 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 1210 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| |||| ||||| |||||||||| ||||||||||||||||| | || Sbjct 1209 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGATGAAATTTCAAAAGTTT 1150 Query 120 ACCCGGACCTGTC-GGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| || ||| ||||| | || ||||| ||| | ||||||||||||||||||| Sbjct 1149 ACCCAAACCCTTCCGGCTAAGGTTAATAAACTCGCTGATTTCATCAGTGTAGCGCGCGTG 1090 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA-CTTCC 228 |||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1089 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTTAAACCTTCC 1038 >seq15509 Length=12340 Score = 279 bits (308), Expect = 8e-73 Identities = 203/230 (88%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 6449 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 6506 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| |||||||||| | || Sbjct 6507 CTCGTTGAAGAACAATAATTGCAATGTTCTATCCCCAGCACGACAAAATTTCAAAAGTTT 6566 Query 120 ACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| ||||||||| || | ||||| || | |||||||||||||||||| Sbjct 6567 ACCCAGACCTTCCGGCCAAGGATGTAAAACTCGCTGGTTTTGTCAGTGTAGCGCGCGTGC 6626 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 6627 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 6676 >seq15113 Length=1229483 Score = 82.4 bits (90), Expect = 1e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 484313 GGACCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 484264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751886084455