Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1349 224 4e-56 seq15509 219 2e-54 >seq1349 Length=1672 Score = 224 bits (248), Expect = 4e-56 Identities = 240/313 (77%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||| || |||| ||||| | ||| | ||||||||| |||||||||||||||||| | Sbjct 786 TAGGTTGTTGGCTTAATGACTCTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCCAC 845 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG----AGG 494 ||| ||| ||| |||||||| ||||||| | |||||| |||| ||| | | | Sbjct 846 CATAAGTGCAAGTATTTGGGTGCCAAACCCATATGCGTAAGGAAACTGATTGATACCAAG 905 Query 495 TGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC---GGATGGATTTGAG 551 | | ||| || | ||| ||| ||| || || || | | || ||| Sbjct 906 TTGTAACA---GATTG-GCAGTATCACCCGGCGTGGACGTTTTAACAGAAATGAACCGAG 961 Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 | |||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 GTAAAGCACTTATGATGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 1021 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| Sbjct 1022 GAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGG 1081 Query 672 GTAT-AGGGGCGA 683 |||| |||||||| Sbjct 1082 GTATAAGGGGCGA 1094 Score = 188 bits (208), Expect = 3e-45 Identities = 157/187 (84%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAA 91 |||| | ||||| |||||||||||||||||| ||||| |||| ||||||| || |||| Sbjct 327 CTTCAAAGAGTCAGGTTGTTTGGGAATGCAGC-CTAAATTGGGTGGTAAATCTCACCTAA 385 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 |||||||||| || |||||||||||||| ||||||| |||| ||||||||||||| | Sbjct 386 AGCTAAATATCTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAA 445 Query 152 CTTTGG-AAAGAGAG-TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 |||||| |||||||| ||||| || | ||||||||||| |||||||| || ||| | ||| Sbjct 446 CTTTGGAAAAGAGAGTTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCA 505 Query 210 GACTTGC 216 |||| || Sbjct 506 GACTGGC 512 >seq15509 Length=12340 Score = 219 bits (242), Expect = 2e-54 Identities = 232/301 (77%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGC 447 ||| ||||| || || | ||||||||| |||||||||||||||||| | ||| ||| Sbjct 4983 GGCATAATGATTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACCATAGTTGC 4924 Query 448 GAGTGTTTGGGTGTCAAA-CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 |||| |||| |||| ||| ||| || |||||| |||| ||| | || | ||| | | Sbjct 4923 GAGTCTTTGAGTGTAAAAACCCATGGGCGTAAGGAAACTGACCA-AGATATGAAGGCCTT 4865 Query 507 AGGGTG-CACCATCGACCGATCCTGATGTCTTCGGATGGATTT---GAGTAAGAGCATAG 562 || || || ||| ||| || || || || ||| ||| | |||| Sbjct 4864 TGGCTGGCAATATCCTCCGGCGAGGACGTTTTATACTGAATTGACCGAGAGAAAGCACCT 4805 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 || ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 4804 ATGATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCT 4745 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 4744 GGTGGAACCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 4685 Query 683 A 683 | Sbjct 4684 A 4684 Score = 196 bits (216), Expect = 2e-47 Identities = 152/181 (84%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 || ||| ||||| |||||||||||||||||| |||||||||||| | |||| ||||| Sbjct 5449 CTGCGAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAGACTTCTCCTAAA 5390 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||||| | | |||||||||||| ||||||| |||| |||||||||||||||| Sbjct 5389 GCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCAC 5330 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGAC 212 |||| |||||| || |||||| ||||||||||| |||||||||| || || || ||| | Sbjct 5329 TTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCC 5270 Query 213 T 213 | Sbjct 5269 T 5269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079664586350