Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq15509 295 1e-77 seq1376 275 1e-71 seq15113 113 7e-23 seq802 86.0 1e-14 >seq15509 Length=12340 Score = 295 bits (326), Expect = 1e-77 Identities = 236/281 (84%), Gaps = 25/281 (9%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6595 ACTCGCTGGTTTTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6654 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---- 117 ||||||||||||| ||||||||| || | ||| || ||||| |||||||||||| Sbjct 6655 CCTGTTATTGCCTAAAACTTCCACTGAATTGAATTCAGTAGTCTCTCTAAGAAGCCGGGG 6714 Query 118 AGCCACCAA----CCATAGTC-----------GATGG---GGCTATTTAGCAGGTTAAGG 159 |||| | || ||||||| | ||| ||||||||||||| |||||| Sbjct 6715 AGCC-CGAAGGCCCCATAGTACCAACTAAAAAGTTGGCCCGGCTATTTAGCAGATTAAGG 6773 Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 6774 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGCA 6833 Query 220 CCACC-ACCCATAGAATCAAGAAAGAGC-TATCAATCTGTC 258 ||||| |||||||||||| ||||||||| | |||||||||| Sbjct 6834 CCACCAACCCATAGAATCTAGAAAGAGCTTTTCAATCTGTC 6874 >seq1376 Length=1996 Score = 275 bits (304), Expect = 1e-71 Identities = 230/279 (82%), Gaps = 22/279 (8%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 ACTCGCTGATTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1061 Query 62 CCTGTTATTGCCTCAAAC-TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||| |||| |||| | |||| |||||| |||||| |||||||||||||| Sbjct 1060 CCTGTTATTGCCTTAAACCTTCCTTCGGCTTGAAGCCGATAGTCTCTCTAAGAAGCCAGA 1001 Query 121 C----------------ACCAACCATA--GTCGATGGGGCTATTTAGCAGGTTAAGGTCT 162 |||||| | | || | | |||| |||||| |||||||| Sbjct 1000 ATAGATTACTCTATTGAACCAACTAAAAAGTTGGCCTGCCTATGTAGCAGAATAAGGTCT 941 Query 163 CGTTC-GTTATCGGAATTAACCAGACAAAT-CACTCCACCAACTAAGAACGGCCA-TGCA 219 ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||| Sbjct 940 CGTTCCGTTATCGGAATTAACCAGACAAATTCACTCCACGAACTAAGAACGGCCAATGCA 881 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| |||||||||| |||||||||| Sbjct 880 CCACCACCCATAGAATCTAGAAAGAGCTTTCAATCTGTC 842 >seq15113 Length=1229483 Score = 113 bits (124), Expect = 7e-23 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 || |||||||||||||||||||||||||||||||||||||| |||||||| | || | || Sbjct 484313 GGACCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCCTTCGGTTCGA 484254 Query 94 AGCCAATAGTCCCTCTAAGAAGCCA 118 |||| || ||| ||||||||||||| Sbjct 484253 AGCCGATGGTCTCTCTAAGAAGCCA 484229 >seq802 Length=2293163 Score = 86.0 bits (94), Expect = 1e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1147186 AACTAAGAACGGCCATGCACCACCACCCATAGAATATAGAAAGAGCTTTCAATCT 1147240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796679297997