Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq15509 684 0.0 seq2836 684 0.0 seq12588 127 7e-27 seq7012 118 3e-24 seq14752 84.2 7e-14 >seq15509 Length=12340 Score = 684 bits (758), Expect = 0.0 Identities = 481/544 (88%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2916 CTTTTACTCTACGCGAGATTTCTGTTCTCGCTGAGTCCCCCTTAGGACACCTGCGTTATT 2975 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 2976 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACTTGACAATGTCAATAACGTGGGTC 3035 Query 127 GGCCCG-CGAAGGACC----TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 | || | | || | || || | | ||||| | | | || | | | | || || Sbjct 3036 GCCCGGGCAAATGCCCAGACTTGATACTAGAAAGTTGGCCTTGCGGCCAAATCCCATATC 3095 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 ||| ||||||||||||||||| ||||||||||||||||| |||||| | |||||| Sbjct 3096 ATTATTTAAGTAAAAAAACGATGGAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCC 3152 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||||||||||| || ||| |||||||| ||| |||||||||||||||||||||| Sbjct 3153 ACTTATTCTACACCCTCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 3212 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3213 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 3272 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3273 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 3332 Query 422 GCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3333 GCATTTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGTTTGA 3392 Query 481 ATTTCTTCACTTTG-ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3393 ATTTCTTCACTTTGAACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTT 3452 Query 540 TCTG 543 |||| Sbjct 3453 TCTG 3456 >seq2836 Length=1950 Score = 684 bits (758), Expect = 0.0 Identities = 484/541 (89%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||| |||||| ||||||||||||||| |||| |||||||||||||||||||||| Sbjct 735 TTTTATTCTACATGAGATTTCTGTTCTCATTGAGCTCCCCTTAGGACACCTGCGTTATCT 794 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 795 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACTTGACAATGTCAATAACGTGGGTCA 854 Query 128 GCCCGCGAAGGACCTTAACGCCAGAAAATG-GTCGGTGAAGAC-CAGTTCCGCTTCATTG 185 || |||| | ||||| | |||| || ||| || ||| || | || ||| ||| Sbjct 855 CGCC-CGAAAGCGCTTAATACTAGAAGGTGAGTCT-TGC-GACTCAATCCCACTTAATTA 911 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct 912 TTTAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACTT 968 Query 246 ATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || ||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 969 ATGCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 1027 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1028 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 1087 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 1147 Query 425 -TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1148 TTTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGTTTGAATT 1207 Query 484 TCTTCACTTTG-ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1208 TCTTCACTTTGAACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCT 1267 Query 543 G 543 | Sbjct 1268 G 1268 >seq12588 Length=181338 Score = 127 bits (140), Expect = 7e-27 Identities = 156/208 (75%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249 ||||| |||||||||| ||||| ||| || ||| |||||| | | ||||| ||| ||| Sbjct 1850 AGTAAGAAAACGATAAAGGTAG-GGTGCTTTACTGACGCCGAGAAG-CTCCCCCTTTTTC 1793 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 || | | | ||| |||||||| ||| ||| ||||| || |||| | ||||||| Sbjct 1792 TAGATATTTTTTGTCTTTTCACAATGTCAAACT-GAGTCCGACTTAACATGCCCTTCTTT 1734 Query 310 ---CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||| || ||| | | || ||||||| ||||||||| ||||||||| | | | | | Sbjct 1733 TCCCCCCGTTGTTTCTGTCGAGTCCGTTCCTTTGGCTGTGATTTCGCTAGTTGGCACACA 1674 Query 367 GGGACAGT---GGGAATCTCGTTAATCC 391 | |||||| ||||||||||||||||| Sbjct 1673 GAGACAGTAGAGGGAATCTCGTTAATCC 1646 >seq7012 Length=541359 Score = 118 bits (130), Expect = 3e-24 Identities = 150/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83 || ||||||||| |||| ||||||||||||||||| |||| |||| ||| ||||||| Sbjct 467626 ATCTCTGTTCTCATTGAGCTCCCCTTAGGACACCTGCATTATCTTTTAGCAGCTGTGCCG 467567 Query 84 CCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC-GGCCCGCGAAGGACCT 142 ||||||||||||||||||| ||||||||||| || || || ||||| || || Sbjct 467566 CCCCAGCCAAACTCCCCACTTGACAATGTCAATAATGTGGGTCACGCCCGAATGGGTGCT 467507 Query 143 TAACGCCAGAAAAT-GGTCGGTGAAGAC-CAGTTCCGCTTCATTGATTAAGT---aaaaa 197 | | | |||| | ||| | ||| || | || ||| || ||| || ||||| Sbjct 467506 TGATACTAGAAGGTAAGTC--TTGCGACTCAATCCCACTTAGTTATTTAGGTAAAAAAAA 467449 Query 198 aaCGATAAGGGTAGTGGTATT 218 |||||||| |||||||||||| Sbjct 467448 AACGATAAAGGTAGTGGTATT 467428 >seq14752 Length=160396 Score = 84.2 bits (92), Expect = 7e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 51 GGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAA 109 ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| || Sbjct 43919 GGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAAATCCCCACTTGAAAA 43977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634944303776