Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15509 562 9e-158 seq1216 515 1e-143 seq1376 152 2e-34 seq14202 118 3e-24 seq3078 109 2e-21 >seq15509 Length=12340 Score = 562 bits (622), Expect = 9e-158 Identities = 441/516 (85%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| ||||||| |||| |||||| || |||||||||||||||||| Sbjct 7600 GTACTCATTCCAATTGCAAGACCTTAAAG-GCCCTGCATTGTTATTTATTGTCACTACCT 7658 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 7659 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT-TGGTAGCCGTT 7717 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 7718 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTGGTCGCCATTGTA 7777 Query 181 GGCCACTATCCTACCATCGAAAG-TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||||| | ||| ||| | || |||||||||||||| | ||||| ||| |||||||| Sbjct 7778 AGCCACTACCTTACAATCAACAGCCTGATAGGGCAGAAAATCGAATGTACCGTCGCCGGC 7837 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--------CCCGAAG 291 |||||||||||||| | | | |||||||||||||||| || | ||| || Sbjct 7838 GCAAGGCCATGCGATCAGCTTAATTATTATGAATCACCATAGAACTGGTTTTACCC--AG 7895 Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC-GGGGTTTTTAGCATGTA 350 | ||| |||| ||||||||| | || |||| |||||||| || |||| ||||||| Sbjct 7896 ---GATGG-TTTTGATCTAATAAGTGCAGCCCTCCCGAAGTCAGGCCTTTTCTGCATGTA 7951 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAAATAAACGATAAC 409 |||||||||||||||||||||||||||| ||||||| ||| | ||| || | ||||| Sbjct 7952 TTAGCTCTAGAATTACCACGGTTATCCA-GTAGTAAAGTATTTGTCATGTAGATCATAAC 8010 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATG 468 |||||||||||||||||||||||||| ||||| | | |||||| |||||||||||||||| Sbjct 8011 TGATTTAATGAGCCATTCGCAGTTTCGCTGTAAAAATTTGCTTTTACTTAGACATGCATG 8070 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 8071 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 8106 Score = 149 bits (164), Expect = 2e-33 Identities = 96/104 (92%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 23 CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAAT 82 ||| ||| |||||| || ||||||||||||||||||||||| || ||||||||||||| Sbjct 11300 CCAGAAG-GCCCTGCATTGTTATTTATTGTCACTACCTCCCCGAGTTGGGATTGGGTAAT 11358 Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11359 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 11402 >seq1216 Length=515 Score = 515 bits (570), Expect = 1e-143 Identities = 395/460 (86%), Gaps = 21/460 (5%) Strand=Plus/Minus Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 456 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 455 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGTAGGCATTGT 396 Query 180 AGGCCACTATCCTACCATC-GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 | ||| ||||| ||| ||| | |||||||||||||| | || || ||| ||||||| Sbjct 395 AAGCCTCTATCTTACAATCATCACCATGATAGGGCAGAAAATCGAGTGGACCGTCGCCGG 336 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG--AGC-------CCCGA 289 | |||||||||||||| || | | ||||||||||||||||||| | | || | Sbjct 335 CACAAGGCCATGCGATCCGCTGAATTATTATGAATCACCAAGGGAAACTGGTTTTACCCA 276 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG--TTTTTAGCAT 347 ||||||| ||||||||||||| | |||||||||||||||| ||| ||||| ||| Sbjct 275 ---GCGTTGG--TTTTATCTAATAAGTGCACCCCTTCCGAAGTCAGGGCTTTTTTTGCAG 221 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA--TCAAATAAACGA 405 ||||||||||||||||||||||||||||||| ||||||| ||| || ||| || | | Sbjct 220 GTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAA-GTAATATGTCACGTAGATCA 162 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATG 464 |||||||||||||||||||||||||||||||| |||| | || ||||||||||||||| Sbjct 161 TAACTGATTTAATGAGCCATTCGCAGTTTCACAATATAAATTTATTTATACTTAGACATG 102 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 101 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 62 >seq1376 Length=1996 Score = 152 bits (168), Expect = 2e-34 Identities = 109/120 (91%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC- 59 ||||||||||||||| ||||||| |||| |||||| || |||||||| |||||||| Sbjct 117 GTACTCATTCCAATTGCAAGACCTTAAAG-GCCCTGCATTGTTATTTATT-TCACTACCC 60 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 59 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT-TGGTAGCCGT 1 >seq14202 Length=219353 Score = 118 bits (130), Expect = 3e-24 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 196669 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAATCTCCGTTA 196728 Query 163 CCCGTTGATACCATGGTAGGCCACTATC 190 ||||||| | ||| || ||| ||||| Sbjct 196729 CCCGTTGTAAGCATTTTAAGCCTCTATC 196756 >seq3078 Length=3033 Score = 109 bits (120), Expect = 2e-21 Identities = 71/77 (92%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 || ||| ||| || | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2959 TAATTAATGTAACAA--TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 3016 Query 103 TTGGATGTGGTAGCCGT 119 ||||||||||||||||| Sbjct 3017 TTGGATGTGGTAGCCGT 3033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510163818752