Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq153 361 1e-97 seq176 77.0 6e-12 >seq153 Length=677625 Score = 361 bits (400), Expect = 1e-97 Identities = 263/301 (87%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | || || | |||||||||| Sbjct 8268 CTTTCCTTCTAGTTAACCTTTATGCACTTCATTGTGTGTACTGGCGATCTAGGACTTTTA 8327 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 8328 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 8387 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 8388 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 8446 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 8447 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 8506 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 8507 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 8565 Query 318 G 318 | Sbjct 8566 G 8566 Score = 361 bits (400), Expect = 1e-97 Identities = 263/301 (87%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | || || | |||||||||| Sbjct 16802 CTTTCCTTCTAGTTAACCTTTATGCACTTCATTGTGTGTACTGGCGATCTAGGACTTTTA 16861 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 16862 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 16921 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 16922 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 16980 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 16981 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 17040 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 17041 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 17099 Query 318 G 318 | Sbjct 17100 G 17100 Score = 361 bits (400), Expect = 1e-97 Identities = 263/301 (87%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | || || | |||||||||| Sbjct 211996 CTTTCCTTCTAGTTAACCTTTATGCACTTCATTGTGTGTACTGGCGATCTAGGACTTTTA 212055 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 212056 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 212115 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 212116 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 212174 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 212175 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 212234 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 212235 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGG 212293 Query 318 G 318 | Sbjct 212294 G 212294 >seq176 Length=447867 Score = 77.0 bits (84), Expect = 6e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 19 CTTTCCTTCTGGGGA-TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || ||| ||||| || | || || || | |||||||||| Sbjct 179030 CTTTCCTTCTAGTTAATCTTTATGAACTTCATTGTATTTGTTGGCGATCTAGGACTTTTA 178971 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||||||||||||||||| | | ||||||| | | |||| ||||||||| Sbjct 178970 CTTTGAAAAAATTAGAGAGCTTAAAGCAGACTTATGCTTTAATACATTA 178922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915197876736