Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq153 691 0.0 seq161 226 9e-57 seq57 118 3e-24 seq1 118 3e-24 seq162 114 4e-23 seq106 104 7e-20 >seq153 Length=677625 Score = 691 bits (766), Expect = 0.0 Identities = 465/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| Sbjct 8096 GTTCTCATTCCAATTACAAGACTATAAA-AGCCCTGTATCGTTATTTATTGTCACTACCT 8038 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 8037 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 7978 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 7977 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 7918 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 7917 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 7858 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 7857 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 7803 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 7802 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTATGCATGTATTA 7743 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 7742 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 7683 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 7682 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 7623 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 7622 TAATCTTTGAGACAAGCATATGACTACTGGCAG 7590 Score = 691 bits (766), Expect = 0.0 Identities = 465/513 (91%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| Sbjct 16630 GTTCTCATTCCAATTACAAGACTATAAA-AGCCCTGTATCGTTATTTATTGTCACTACCT 16572 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 16571 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 16512 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 16511 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAACCATGGTA 16452 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 16451 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGTCGACG 16392 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGGGC 294 || | ||| ||||||| |||||||||||||||||||| || ||| || Sbjct 16391 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAAAAACTGGTTGCCC--AG--- 16337 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 16336 GTTGGTTTTTTATCTAATAAATACAACCCTTCCAGAAGTCGGGTTTTTATGCATGTATTA 16277 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 16276 GCTCTAGAATTACCACGGTTATCCAAGTAGTAATGGTACTATCAAATAAACTATAACTGA 16217 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 16216 TTTAATGAGCCATTCGCAGTTTCACAGTATAGAATTGTTTATACTTAGACATGCATGGCT 16157 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 16156 TAATCTTTGAGACAAGCATATGACTACTGGCAG 16124 >seq161 Length=591530 Score = 226 bits (250), Expect = 9e-57 Identities = 176/206 (85%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||| ||||||||||| ||||||| |||||| ||||||| ||| |||||||||||| Sbjct 139013 TTTTATTTAATAAATACAACCCTTCCAGAAGTCAGGGTTTTATTCATATATTAGCTCTAG 139072 Query 361 AATTACCACGGTTATCCATGTAGTAAGG-TACTATCAAATAAACGATAACTGATTTAATG 419 |||||||||||||||||| |||||| | ||||||||||||||| ||||||||||||||| Sbjct 139073 AATTACCACGGTTATCCAAATAGTAATGATACTATCAAATAAACTATAACTGATTTAATG 139132 Query 420 AGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 || |||| ||| |||||| |||||| |||| |||| | || |||||||||||||| Sbjct 139133 AGTCATTTGCATTTTCACAGTATAGAATTGTTTAT------AAATACATGGCTTAATCTT 139186 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||| |||| Sbjct 139187 TAAAACAAGCATATGACTACTAGCAG 139212 >seq57 Length=911805 Score = 118 bits (130), Expect = 3e-24 Identities = 95/112 (85%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 324 TTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 |||| |||||| | |||| | || |||||| ||||||||||||||||||||||| ||| Sbjct 424165 TTCCAGAAGTCAGATTTTTATGTATATATTAGATCTAGAATTACCACGGTTATCCAAGTA 424106 Query 383 GTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| ||||||||||||| ||| || |||||||||||||| ||| |||||| Sbjct 424105 GTAATGGTACTATCAAATGAACTATGGCTGATTTAATGAGCTATTAGCAGTT 424054 >seq1 Length=2625575 Score = 118 bits (130), Expect = 3e-24 Identities = 106/129 (82%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 379 TGTAGTAA-GGTACT-ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 |||||||| |||||| |||||||||| ||| |||||||||| || |||||||||||||| Sbjct 2349227 TGTAGTAATGGTACTTATCAAATAAAATATATCTGATTTAATAAGTCATTCGCAGTTTCA 2349286 Query 437 CTGTATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 | | ||| | || ||||| |||||| || ||| |||||||||| ||| || || |||| Sbjct 2349287 CAATTTAGAACTGTTTATAATTAGACTTGTATGACTTAATCTTTAAGATAAATATTTGAC 2349346 Query 496 TACTGGCAG 504 |||| |||| Sbjct 2349347 TACTAGCAG 2349355 >seq162 Length=582566 Score = 114 bits (126), Expect = 4e-23 Identities = 93/110 (85%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||| ||||||||||| ||| | |||||||| | |||||||||||||||||| Sbjct 250983 GTTCTCATTC-AATTACAAGACTATAAAAA-CCCTGTATTATTATTTATTGTCACTACCT 251040 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||| ||||| |||||| |||||| ||| |||||| |||||||| ||||| Sbjct 251041 CCCTGTGTCATGATTGGATAATTTACGCACCTGCTTCCTTCCTTAGATGT 251090 >seq106 Length=18671 Score = 104 bits (114), Expect = 7e-20 Identities = 93/113 (82%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 324 TTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 |||| |||||| | |||| | || |||||| ||||||||||||||| ||||||| ||| Sbjct 13777 TTCCAGAAGTCAGATTTTTATGTATATATTAGATCTAGAATTACCACG-TTATCCAAGTA 13719 Query 383 GTAA--GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 || | ||||||||||||| ||| || |||||||||||||| ||| |||||| Sbjct 13718 GTTAATGGTACTATCAAATGAACTATGGCTGATTTAATGAGCTATTAGCAGTT 13666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396495872