Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq314 118 2e-24 seq258 118 2e-24 >seq314 Length=23100 Score = 118 bits (130), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC-TCTCAAATTTCC 146 |||||| ||||| | | ||||||||||||| | | | ||| ||| || ||| | Sbjct 18563 CACCAGTGGTTTACATAATCAGGTCCTCTCGTACCATGATC--CTCGATCTTAATTTTTC 18506 Query 147 TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGC 206 | | | | |||||||||||| ||||||||||||||| || |||||| ||| ||| | Sbjct 18505 CAATCTCTCTGAGGATAGGGACCGTACTGTCTCGCGACGTACTTAACCCAACTCACGTAC 18446 Query 207 CTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 || |||| | ||||||| ||||||||||||| | |||||||||||| ||| ||| Sbjct 18445 CTTTTTATGCAGAGAACAGCTGCACCCTTGGGACCTCTTGCAGCCCCAGGATAAGAAGAG 18386 Query 267 CCGACATCG 275 |||||||| Sbjct 18385 TCGACATCG 18377 >seq258 Length=32645 Score = 118 bits (130), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC-TCTCAAATTTCC 146 |||||| ||||| | | ||||||||||||| | | | ||| ||| || ||| | Sbjct 17482 CACCAGTGGTTTACATAATCAGGTCCTCTCGTACCATGATC--CTCGATCTTAATTTTTC 17539 Query 147 TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGC 206 | | | | |||||||||||| ||||||||||||||| || |||||| ||| ||| | Sbjct 17540 CAATCTCTCTGAGGATAGGGACCGTACTGTCTCGCGACGTACTTAACCCAACTCACGTAC 17599 Query 207 CTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 || |||| | ||||||| ||||||||||||| | |||||||||||| ||| ||| Sbjct 17600 CTTTTTATGCAGAGAACAGCTGCACCCTTGGGACCTCTTGCAGCCCCAGGATAAGAAGAG 17659 Query 267 CCGACATCG 275 |||||||| Sbjct 17660 TCGACATCG 17668 Score = 105 bits (116), Expect = 1e-20 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 159 GGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 ||||||| |||| ||||||||||||||| || |||||| ||| ||| ||| |||| | Sbjct 30970 GGATAGG-ACCGTACTGTCTCGCGACGTACT-AACCCAACTCACGTACCTTTTTATGCAG 30913 Query 219 CGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||||||| | |||||||||||| ||| ||| |||||||| Sbjct 30912 AGAACAGCTGCACCCTTGGGACCTCTTGCAGCCCCAGGATAAGAAGAGTCGACATCG 30856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780796694532