Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq38 264 9e-66 seq13 264 9e-66 >seq38 Length=108757 Score = 264 bits (292), Expect = 9e-66 Identities = 904/1394 (65%), Gaps = 40/1394 (3%) Strand=Plus/Plus Query 65239 ACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTA 65298 |||||| || ||||||||||| |||||| | || || |||||||| |||||||| Sbjct 86891 ACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGACAGTCTTGTA 86950 Query 65299 CAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT 65358 | | | ||| |||||| | ||| |||||||| ||| ||||| Sbjct 86951 GATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGACTGATCCATTCTCAGCAAT 87010 Query 65359 AATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGAT-AAGATGTTGAACCAAGT 65417 ||| || || ||| | || ||| ||||| | ||| | ||| || ||| |||| Sbjct 87011 AATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCCTTCAAC-AAGT 87069 Query 65418 GACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGA 65477 | |||| | | |||||| || || | || ||||| || ||||| ||| ||| Sbjct 87070 GCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTGCTTGTGT 87129 Query 65478 TGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAG 65537 |||||||| | || |||| || ||||| || | || |||||||||||||| |||| Sbjct 87130 ACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATTGGAG 87189 Query 65538 CGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGT 65597 | | |||||| |||||||| | |||| | | | | || || | | ||||||| Sbjct 87190 CCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGAGCATCCCAGT 87249 Query 65598 TCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----G 65653 ||| ||| | | | || | ||| | | ||| | || |||||| ||| | Sbjct 87250 -CCAAATCAGAGTTGC-TCAA-ATCAATGTTCCAAAGGTCTGGTTGCAACTGTCCTTTTG 87306 Query 65654 ATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAG 65713 | | ||| | || | || | ||| || || | | ||||| | ||| Sbjct 87307 ACATTGGGCTT----CCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACAC 87362 Query 65714 CTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGC 65772 | ||| | || || | || ||| | || || || | || || || || || Sbjct 87363 GAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGAT-CTTCTTGTTCAGCTCTTTCGC 87421 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 | ||| ||| | || | || |||| || |||| ||||| || ||||||||||| Sbjct 87422 TCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCC 87481 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892 || |||||| || || ||||||| || || | |||||| ||||||||| |||| Sbjct 87482 AAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATT 87541 Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC 65952 || || || || ||||| || |||| || | || | || | || || Sbjct 87542 AATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTC 87601 Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012 || || || | ||| | ||| ||||| ||||||| | Sbjct 87602 AAAGTCGTAA---------------GTAGTCTTGTTCACAACAAAGGCTGGAAGGGAGAT 87646 Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 ||| || ||||| ||||| || || |||||||||| || |||||||| ||||| ||||| Sbjct 87647 AGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCA 87706 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || |||||||| ||||||||||| |||||||| ||| ||||| || || ||||| Sbjct 87707 AAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATC 87766 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||||| |||||| || || || ||||| ||| |||||||| ||||||| |||||| Sbjct 87767 TTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAG 87826 Query 66193 AGCGCGTGCCTTCACCGTAC-GTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGG 66250 | ||||| | || ||| | || | ||||||||||| || ||| || || Sbjct 87827 CTTCTGAGCCTTGA--TAACTTTACGGGCCAACCCTTTGCGTTCATATGATTCATAAAGT 87884 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT-GTGTGGACACATCAG 66309 ||| || ||| ||||| || || | ||| | ||| |||||| | || Sbjct 87885 GCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGG-CGCTTCACTTGGACAGAAGAG 87943 Query 66310 CGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 ||||| ||||||| || ||| ||||| |||||| | ||| |||||||| || Sbjct 87944 AGACCAGTCACCAT--TGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCA 88001 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| | || || || || | ||||| | || ||| || | || ||||| Sbjct 88002 TAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAAT 88061 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 |||||||| || || |||||||| |||| |||||| || || | || ||| ||| | Sbjct 88062 TCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTG 88121 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || ||||| || || |||||||| || ||||||||||| | |||||| | || || Sbjct 88122 CCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCA 88181 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || | || ||||| || | ||| || || || || || | |||| ||| Sbjct 88182 TTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTATGAATATTA 88241 Query 66608 AGACCAATACCACC 66621 | |||||||||||| Sbjct 88242 ATACCAATACCACC 88255 >seq13 Length=692062 Score = 264 bits (292), Expect = 9e-66 Identities = 904/1394 (65%), Gaps = 40/1394 (3%) Strand=Plus/Plus Query 65239 ACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTA 65298 |||||| || ||||||||||| |||||| | || || |||||||| |||||||| Sbjct 276687 ACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGACAGTCTTGTA 276746 Query 65299 CAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT 65358 | | | ||| |||||| | ||| |||||||| ||| ||||| Sbjct 276747 GATACCCTTGAGATCAGCTGGAATAGCGCTGATGCGTTGGACTGATCCATTCTCAGCAAT 276806 Query 65359 AATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGAT-AAGATGTTGAACCAAGT 65417 ||| || || ||| | || ||| ||||| | ||| | ||| || ||| |||| Sbjct 276807 AATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCCTTCAAC-AAGT 276865 Query 65418 GACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGA 65477 | |||| | | |||||| || || | || ||||| || ||||| ||| ||| Sbjct 276866 GCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTGCTTGTGT 276925 Query 65478 TGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAG 65537 |||||||| | || |||| || ||||| || | || |||||||||||||| |||| Sbjct 276926 ACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATTGGAG 276985 Query 65538 CGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGT 65597 | | |||||| |||||||| | |||| | | | | || || | | ||||||| Sbjct 276986 CCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGAGCATCCCAGT 277045 Query 65598 TCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----G 65653 ||| ||| | | | || | ||| | | ||| | || |||||| ||| | Sbjct 277046 -CCAAATCAGAGTTGC-TCAA-ATCAATGTTCCAAAGGTCTGGTTGCAACTGTCCTTTTG 277102 Query 65654 ATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAG 65713 | | ||| | || | || | ||| || || | | ||||| | ||| Sbjct 277103 ACATTGGGCTT----CCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACAC 277158 Query 65714 CTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGC 65772 | ||| | || || | || ||| | || || || | || || || || || Sbjct 277159 GAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGAT-CTTCTTGTTCAGCTCTTTCGC 277217 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 | ||| ||| | || | || |||| || |||| ||||| || ||||||||||| Sbjct 277218 TCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCC 277277 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892 || |||||| || || ||||||| || || | |||||| ||||||||| |||| Sbjct 277278 AAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATT 277337 Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC 65952 || || || || ||||| || |||| || | || | || | || || Sbjct 277338 AATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTC 277397 Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012 || || || | ||| | ||| ||||| ||||||| | Sbjct 277398 AAAGTCGTAA---------------GTAGTCTTGTTCACAACAAAGGCTGGAAGGGAGAT 277442 Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 ||| || ||||| ||||| || || |||||||||| || |||||||| ||||| ||||| Sbjct 277443 AGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCA 277502 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || |||||||| ||||||||||| |||||||| ||| ||||| || || ||||| Sbjct 277503 AAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATC 277562 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||||| |||||| || || || ||||| ||| |||||||| ||||||| |||||| Sbjct 277563 TTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAG 277622 Query 66193 AGCGCGTGCCTTCACCGTAC-GTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGG 66250 | ||||| | || ||| | || | ||||||||||| || ||| || || Sbjct 277623 CTTCTGAGCCTTGA--TAACTTTACGGGCCAACCCTTTGCGTTCATATGATTCATAAAGT 277680 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT-GTGTGGACACATCAG 66309 ||| || ||| ||||| || || | ||| | ||| |||||| | || Sbjct 277681 GCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGG-CGCTTCACTTGGACAGAAGAG 277739 Query 66310 CGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 ||||| ||||||| || ||| ||||| |||||| | ||| |||||||| || Sbjct 277740 AGACCAGTCACCAT--TGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCA 277797 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| | || || || || | ||||| | || ||| || | || ||||| Sbjct 277798 TAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAAT 277857 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 |||||||| || || |||||||| |||| |||||| || || | || ||| ||| | Sbjct 277858 TCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTG 277917 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || ||||| || || |||||||| || ||||||||||| | |||||| | || || Sbjct 277918 CCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCA 277977 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || | || ||||| || | ||| || || || || || | |||| ||| Sbjct 277978 TTCGAATGTCCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTATGAATATTA 278037 Query 66608 AGACCAATACCACC 66621 | |||||||||||| Sbjct 278038 ATACCAATACCACC 278051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565882577680